Literature DB >> 16607023

Specific effects of ribosome-tethered molecular chaperones on programmed -1 ribosomal frameshifting.

Kristi L Muldoon-Jacobs1, Jonathan D Dinman.   

Abstract

The ribosome-associated molecular chaperone complexes RAC (Ssz1p/Zuo1p) and Ssb1p/Ssb2p expose a link between protein folding and translation. Disruption of the conserved nascent peptide-associated complex results in cell growth and translation fidelity defects. To better understand the consequences of deletion of either RAC or Ssb1p/2p, experiments relating to cell growth and programmed ribosomal frameshifting (PRF) were assayed. Genetic analyses revealed that deletion of Ssb1p/Ssb2p or of Ssz1p/Zuo1p resulted in specific inhibition of -1 PRF and defects in Killer virus maintenance, while no effects were observed on +1 PRF. These factors may provide a new set of targets to exploit against viruses that use -1 PRF. Quantitative measurements of growth profiles of isogenic wild-type and mutant cells showed that translational inhibitors exacerbate underlying growth defects in these mutants. Previous studies have identified -1 PRF signals in yeast chromosomal genes and have demonstrated an inverse relationship between -1 PRF efficiency and mRNA stability. Analysis of published DNA microarray experiments reveals conditions under which Ssb1, Ssb2, Ssz1, and Zuo1 transcript levels are regulated independently of those of genes encoding ribosomal proteins. Thus, the findings presented here suggest that these trans-acting factors could be used by cells to posttranscriptionally regulate gene expression through -1 PRF.

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Year:  2006        PMID: 16607023      PMCID: PMC1459665          DOI: 10.1128/EC.5.4.762-770.2006

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN: 1535-9786


  53 in total

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2.  A programmed -1 ribosomal frameshift signal can function as a cis-acting mRNA destabilizing element.

Authors:  Ewan P Plant; Pinger Wang; Jonathan L Jacobs; Jonathan D Dinman
Journal:  Nucleic Acids Res       Date:  2004-02-03       Impact factor: 16.971

Review 3.  Ribosome function: governing the fate of a nascent polypeptide.

Authors:  Sabine Rospert
Journal:  Curr Biol       Date:  2004-05-25       Impact factor: 10.834

4.  Ribosomal protein L3: influence on ribosome structure and function.

Authors:  Alexey Petrov; Arturas Meskauskas; Jonathan D Dinman
Journal:  RNA Biol       Date:  2004-05-01       Impact factor: 4.652

5.  The ribosome-bound chaperones RAC and Ssb1/2p are required for accurate translation in Saccharomyces cerevisiae.

Authors:  Magdalena Rakwalska; Sabine Rospert
Journal:  Mol Cell Biol       Date:  2004-10       Impact factor: 4.272

6.  Electron microscopic heteroduplex analysis of "killer" double-stranded RNA species from yeast.

Authors:  H M Fried; G R Fink
Journal:  Proc Natl Acad Sci U S A       Date:  1978-09       Impact factor: 11.205

7.  Transformation of intact yeast cells treated with alkali cations.

Authors:  H Ito; Y Fukuda; K Murata; A Kimura
Journal:  J Bacteriol       Date:  1983-01       Impact factor: 3.490

8.  A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.

Authors:  R S Sikorski; P Hieter
Journal:  Genetics       Date:  1989-05       Impact factor: 4.562

Review 9.  Reprogrammed genetic decoding in cellular gene expression.

Authors:  Olivier Namy; Jean-Pierre Rousset; Sawsan Napthine; Ian Brierley
Journal:  Mol Cell       Date:  2004-01-30       Impact factor: 17.970

10.  Identification of a new antizyme mRNA +1 frameshifting stimulatory pseudoknot in a subset of diverse invertebrates and its apparent absence in intermediate species.

Authors:  Ivaylo P Ivanov; Christine B Anderson; Raymond F Gesteland; John F Atkins
Journal:  J Mol Biol       Date:  2004-06-04       Impact factor: 5.469

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  19 in total

1.  Fine-tuning of translation termination efficiency in Saccharomyces cerevisiae involves two factors in close proximity to the exit tunnel of the ribosome.

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Journal:  Genetics       Date:  2007-05-04       Impact factor: 4.562

2.  rRNA suppressor of a eukaryotic translation initiation factor 5B/initiation factor 2 mutant reveals a binding site for translational GTPases on the small ribosomal subunit.

Authors:  Byung-Sik Shin; Joo-Ran Kim; Michael G Acker; Kathryn N Maher; Jon R Lorsch; Thomas E Dever
Journal:  Mol Cell Biol       Date:  2008-11-24       Impact factor: 4.272

3.  Decoding the Function of Expansion Segments in Ribosomes.

Authors:  Kotaro Fujii; Teodorus Theo Susanto; Saumya Saurabh; Maria Barna
Journal:  Mol Cell       Date:  2018-12-20       Impact factor: 17.970

4.  Alleviation of deleterious effects of protein mutation through inactivation of molecular chaperones.

Authors:  Katarzyna Tomala; Ryszard Korona
Journal:  Mol Genet Genomics       Date:  2008-09-02       Impact factor: 3.291

5.  Structural basis for interaction of a cotranslational chaperone with the eukaryotic ribosome.

Authors:  Yixiao Zhang; Chengying Ma; Yi Yuan; Jing Zhu; Ningning Li; Chu Chen; Shan Wu; Li Yu; Jianlin Lei; Ning Gao
Journal:  Nat Struct Mol Biol       Date:  2014-11-02       Impact factor: 15.369

Review 6.  Two chaperones locked in an embrace: structure and function of the ribosome-associated complex RAC.

Authors:  Ying Zhang; Irmgard Sinning; Sabine Rospert
Journal:  Nat Struct Mol Biol       Date:  2017-08-03       Impact factor: 15.369

7.  Cotranslational folding stimulates programmed ribosomal frameshifting in the alphavirus structural polyprotein.

Authors:  Haley R Harrington; Matthew H Zimmer; Laura M Chamness; Veronica Nash; Wesley D Penn; Thomas F Miller; Suchetana Mukhopadhyay; Jonathan P Schlebach
Journal:  J Biol Chem       Date:  2020-03-13       Impact factor: 5.157

8.  Tracking fluctuation hotspots on the yeast ribosome through the elongation cycle.

Authors:  Suna P Gulay; Sujal Bista; Amitabh Varshney; Serdal Kirmizialtin; Karissa Y Sanbonmatsu; Jonathan D Dinman
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

9.  Ribosome-associated complex binds to ribosomes in close proximity of Rpl31 at the exit of the polypeptide tunnel in yeast.

Authors:  Kristin Peisker; Daniel Braun; Tina Wölfle; Jendrik Hentschel; Ursula Fünfschilling; Gunter Fischer; Albert Sickmann; Sabine Rospert
Journal:  Mol Biol Cell       Date:  2008-10-01       Impact factor: 4.138

10.  A ribosome-anchored chaperone network that facilitates eukaryotic ribosome biogenesis.

Authors:  Véronique Albanèse; Stefanie Reissmann; Judith Frydman
Journal:  J Cell Biol       Date:  2010-04-05       Impact factor: 10.539

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