Literature DB >> 25362488

Structural basis for interaction of a cotranslational chaperone with the eukaryotic ribosome.

Yixiao Zhang1, Chengying Ma1, Yi Yuan1, Jing Zhu2, Ningning Li1, Chu Chen1, Shan Wu1, Li Yu2, Jianlin Lei1, Ning Gao1.   

Abstract

Cotranslational chaperones, ubiquitous in all living organisms, protect nascent polypeptides from aggregation and facilitate their de novo folding. Importantly, emerging data have also suggested that ribosome-associated cotranslational chaperones have active regulatory roles in modulating protein translation. By characterizing the structure of a type of eukaryotic cotranslational chaperone, the ribosome-associated complex (RAC) from Saccharomyces cerevisiae, we show that RAC cross-links two ribosomal subunits, through a single long α-helix, to limit the predominant intersubunit rotation required for peptide elongation. We further demonstrate that any changes in the continuity, length or rigidity of this middle α-helix impair RAC function in vivo. Our results suggest a new mechanism in which RAC directly regulates protein translation by mechanically coupling cotranslational folding with the peptide-elongation cycle, and they lay the foundation for further exploration of regulatory roles of RAC in translation control.

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Year:  2014        PMID: 25362488     DOI: 10.1038/nsmb.2908

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  45 in total

1.  RAC, a stable ribosome-associated complex in yeast formed by the DnaK-DnaJ homologs Ssz1p and zuotin.

Authors:  M Gautschi; H Lilie; U Fünfschilling; A Mun; S Ross; T Lithgow; P Rücknagel; S Rospert
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-27       Impact factor: 11.205

2.  Structure of the signal recognition particle interacting with the elongation-arrested ribosome.

Authors:  Mario Halic; Thomas Becker; Martin R Pool; Christian M T Spahn; Robert A Grassucci; Joachim Frank; Roland Beckmann
Journal:  Nature       Date:  2004-02-26       Impact factor: 49.962

3.  SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs.

Authors:  Tanvir R Shaikh; Haixiao Gao; William T Baxter; Francisco J Asturias; Nicolas Boisset; Ardean Leith; Joachim Frank
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

4.  Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics.

Authors:  Leonardo G Trabuco; Elizabeth Villa; Kakoli Mitra; Joachim Frank; Klaus Schulten
Journal:  Structure       Date:  2008-05       Impact factor: 5.006

5.  Structural basis of interdomain communication in the Hsc70 chaperone.

Authors:  Jianwen Jiang; Kondury Prasad; Eileen M Lafer; Rui Sousa
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

6.  Ribosome-associated complex and Ssb are required for translational repression induced by polylysine segments within nascent chains.

Authors:  Marco Chiabudini; Charlotte Conz; Friederike Reckmann; Sabine Rospert
Journal:  Mol Cell Biol       Date:  2012-09-24       Impact factor: 4.272

Review 7.  Ribosome profiling: new views of translation, from single codons to genome scale.

Authors:  Nicholas T Ingolia
Journal:  Nat Rev Genet       Date:  2014-01-28       Impact factor: 53.242

8.  Role for the molecular chaperones Zuo1 and Ssz1 in quorum sensing via activation of the transcription factor Pdr1.

Authors:  Amy J Prunuske; Jeanette K Waltner; Peter Kuhn; Bohao Gu; Elizabeth Anne Craig
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

9.  Widespread regulation of translation by elongation pausing in heat shock.

Authors:  Reut Shalgi; Jessica A Hurt; Irina Krykbaeva; Mikko Taipale; Susan Lindquist; Christopher B Burge
Journal:  Mol Cell       Date:  2013-01-03       Impact factor: 17.970

10.  Unfolding of the C-terminal domain of the J-protein Zuo1 releases autoinhibition and activates Pdr1-dependent transcription.

Authors:  Jeanette K Ducett; Francis C Peterson; Lindsey A Hoover; Amy J Prunuske; Brian F Volkman; Elizabeth A Craig
Journal:  J Mol Biol       Date:  2012-10-02       Impact factor: 5.469

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  34 in total

1.  Decoding the Function of Expansion Segments in Ribosomes.

Authors:  Kotaro Fujii; Teodorus Theo Susanto; Saumya Saurabh; Maria Barna
Journal:  Mol Cell       Date:  2018-12-20       Impact factor: 17.970

2.  Profiling Ssb-Nascent Chain Interactions Reveals Principles of Hsp70-Assisted Folding.

Authors:  Kristina Döring; Nabeel Ahmed; Trine Riemer; Harsha Garadi Suresh; Yevhen Vainshtein; Markus Habich; Jan Riemer; Matthias P Mayer; Edward P O'Brien; Günter Kramer; Bernd Bukau
Journal:  Cell       Date:  2017-07-13       Impact factor: 41.582

3.  Protein Synthesis in the Developing Neocortex at Near-Atomic Resolution Reveals Ebp1-Mediated Neuronal Proteostasis at the 60S Tunnel Exit.

Authors:  Matthew L Kraushar; Ferdinand Krupp; Dermot Harnett; Paul Turko; Mateusz C Ambrozkiewicz; Thiemo Sprink; Koshi Imami; Manuel Günnigmann; Ulrike Zinnall; Carlos H Vieira-Vieira; Theres Schaub; Agnieszka Münster-Wandowski; Jörg Bürger; Ekaterina Borisova; Hiroshi Yamamoto; Mladen-Roko Rasin; Uwe Ohler; Dieter Beule; Thorsten Mielke; Victor Tarabykin; Markus Landthaler; Günter Kramer; Imre Vida; Matthias Selbach; Christian M T Spahn
Journal:  Mol Cell       Date:  2020-12-22       Impact factor: 17.970

Review 4.  Two chaperones locked in an embrace: structure and function of the ribosome-associated complex RAC.

Authors:  Ying Zhang; Irmgard Sinning; Sabine Rospert
Journal:  Nat Struct Mol Biol       Date:  2017-08-03       Impact factor: 15.369

5.  Structural insights into a unique Hsp70-Hsp40 interaction in the eukaryotic ribosome-associated complex.

Authors:  Felix Alexander Weyer; Andrea Gumiero; Genís Valentín Gesé; Karine Lapouge; Irmgard Sinning
Journal:  Nat Struct Mol Biol       Date:  2017-01-09       Impact factor: 15.369

Review 6.  How Do J-Proteins Get Hsp70 to Do So Many Different Things?

Authors:  Elizabeth A Craig; Jaroslaw Marszalek
Journal:  Trends Biochem Sci       Date:  2017-03-15       Impact factor: 13.807

7.  A conserved domain important for association of eukaryotic J-protein co-chaperones Jjj1 and Zuo1 with the ribosome.

Authors:  Lindsey A Kaschner; Ruchika Sharma; Om Kumar Shrestha; Alison E Meyer; Elizabeth A Craig
Journal:  Biochim Biophys Acta       Date:  2015-01-30

8.  Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii.

Authors:  Zhifei Li; Qiang Guo; Lvqin Zheng; Yongsheng Ji; Yi-Ting Xie; De-Hua Lai; Zhao-Rong Lun; Xun Suo; Ning Gao
Journal:  Cell Res       Date:  2017-08-15       Impact factor: 25.617

9.  Role for ribosome-associated complex and stress-seventy subfamily B (RAC-Ssb) in integral membrane protein translation.

Authors:  Ligia Acosta-Sampson; Kristina Döring; Yuping Lin; Vivian Y Yu; Bernd Bukau; Günter Kramer; Jamie H D Cate
Journal:  J Biol Chem       Date:  2017-10-02       Impact factor: 5.157

10.  Structural basis for the disaggregase activity and regulation of Hsp104.

Authors:  Alexander Heuck; Sonja Schitter-Sollner; Marcin Józef Suskiewicz; Robert Kurzbauer; Juliane Kley; Alexander Schleiffer; Pascaline Rombaut; Franz Herzog; Tim Clausen
Journal:  Elife       Date:  2016-11-30       Impact factor: 8.140

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