Literature DB >> 17483428

Fine-tuning of translation termination efficiency in Saccharomyces cerevisiae involves two factors in close proximity to the exit tunnel of the ribosome.

Isabelle Hatin1, Céline Fabret, Olivier Namy, Wayne A Decatur, Jean-Pierre Rousset.   

Abstract

In eukaryotes, release factors 1 and 3 (eRF1 and eRF3) are recruited to promote translation termination when a stop codon on the mRNA enters at the ribosomal A-site. However, their overexpression increases termination efficiency only moderately, suggesting that other factors might be involved in the termination process. To determine such unknown components, we performed a genetic screen in Saccharomyces cerevisiae that identified genes increasing termination efficiency when overexpressed. For this purpose, we constructed a dedicated reporter strain in which a leaky stop codon is inserted into the chromosomal copy of the ade2 gene. Twenty-five antisuppressor candidates were identified and characterized for their impact on readthrough. Among them, SSB1 and snR18, two factors close to the exit tunnel of the ribosome, directed the strongest antisuppression effects when overexpressed, showing that they may be involved in fine-tuning of the translation termination level.

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Year:  2007        PMID: 17483428      PMCID: PMC2147991          DOI: 10.1534/genetics.107.070771

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  75 in total

1.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

2.  GTP hydrolysis by eRF3 facilitates stop codon decoding during eukaryotic translation termination.

Authors:  Joe Salas-Marco; David M Bedwell
Journal:  Mol Cell Biol       Date:  2004-09       Impact factor: 4.272

3.  Sequence analysis suggests that tetra-nucleotides signal the termination of protein synthesis in eukaryotes.

Authors:  C M Brown; P A Stockwell; C N Trotman; W P Tate
Journal:  Nucleic Acids Res       Date:  1990-11-11       Impact factor: 16.971

4.  The release of polypeptide chains from ribosomes in cell-free amino acid-incorporating systems by specific combinations of bases in synthetic polyribonucleotides.

Authors:  M Takanami; Y Yan
Journal:  Proc Natl Acad Sci U S A       Date:  1965-11       Impact factor: 11.205

5.  A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli.

Authors:  C S Hoffman; F Winston
Journal:  Gene       Date:  1987       Impact factor: 3.688

6.  UGA: a third nonsense triplet in the genetic code.

Authors:  S Brenner; L Barnett; E R Katz; F H Crick
Journal:  Nature       Date:  1967-02-04       Impact factor: 49.962

7.  Aminoglycoside antibiotics mediate context-dependent suppression of termination codons in a mammalian translation system.

Authors:  M Manuvakhova; K Keeling; D M Bedwell
Journal:  RNA       Date:  2000-07       Impact factor: 4.942

8.  Genetic study of interactions between the cytoskeletal assembly protein sla1 and prion-forming domain of the release factor Sup35 (eRF3) in Saccharomyces cerevisiae.

Authors:  P A Bailleul; G P Newnam; J N Steenbergen; Y O Chernoff
Journal:  Genetics       Date:  1999-09       Impact factor: 4.562

9.  Poly(A)-binding protein acts in translation termination via eukaryotic release factor 3 interaction and does not influence [PSI(+)] propagation.

Authors:  Bertrand Cosson; Anne Couturier; Svetlana Chabelskaya; Denis Kiktev; Sergey Inge-Vechtomov; Michel Philippe; Galina Zhouravleva
Journal:  Mol Cell Biol       Date:  2002-05       Impact factor: 4.272

10.  The products of the SUP45 (eRF1) and SUP35 genes interact to mediate translation termination in Saccharomyces cerevisiae.

Authors:  I Stansfield; K M Jones; V V Kushnirov; A R Dagkesamanskaya; A I Poznyakovski; S V Paushkin; C R Nierras; B S Cox; M D Ter-Avanesyan; M F Tuite
Journal:  EMBO J       Date:  1995-09-01       Impact factor: 11.598

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  14 in total

1.  Release factor eRF3 mediates premature translation termination on polylysine-stalled ribosomes in Saccharomyces cerevisiae.

Authors:  Marco Chiabudini; Arlette Tais; Ying Zhang; Sachiko Hayashi; Tina Wölfle; Edith Fitzke; Sabine Rospert
Journal:  Mol Cell Biol       Date:  2014-08-25       Impact factor: 4.272

2.  Mutants of the Paf1 complex alter phenotypic expression of the yeast prion [PSI+].

Authors:  Lisa A Strawn; Changyi A Lin; Elizabeth M H Tank; Morwan M Osman; Sarah A Simpson; Heather L True
Journal:  Mol Biol Cell       Date:  2009-02-18       Impact factor: 4.138

3.  Profiling Ssb-Nascent Chain Interactions Reveals Principles of Hsp70-Assisted Folding.

Authors:  Kristina Döring; Nabeel Ahmed; Trine Riemer; Harsha Garadi Suresh; Yevhen Vainshtein; Markus Habich; Jan Riemer; Matthias P Mayer; Edward P O'Brien; Günter Kramer; Bernd Bukau
Journal:  Cell       Date:  2017-07-13       Impact factor: 41.582

Review 4.  Two chaperones locked in an embrace: structure and function of the ribosome-associated complex RAC.

Authors:  Ying Zhang; Irmgard Sinning; Sabine Rospert
Journal:  Nat Struct Mol Biol       Date:  2017-08-03       Impact factor: 15.369

5.  Ribosome-associated complex and Ssb are required for translational repression induced by polylysine segments within nascent chains.

Authors:  Marco Chiabudini; Charlotte Conz; Friederike Reckmann; Sabine Rospert
Journal:  Mol Cell Biol       Date:  2012-09-24       Impact factor: 4.272

Review 6.  Modulation of efficiency of translation termination in Saccharomyces cerevisiae.

Authors:  Anton A Nizhnikov; Kirill S Antonets; Sergey G Inge-Vechtomov; Irina L Derkatch
Journal:  Prion       Date:  2014-11-01       Impact factor: 3.931

7.  Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster.

Authors:  Joshua G Dunn; Catherine K Foo; Nicolette G Belletier; Elizabeth R Gavis; Jonathan S Weissman
Journal:  Elife       Date:  2013-12-03       Impact factor: 8.140

8.  Elongation factor eEF1B modulates functions of the release factors eRF1 and eRF3 and the efficiency of translation termination in yeast.

Authors:  Igor A Valouev; Gleb V Fominov; Elizaveta E Sokolova; Vladimir N Smirnov; Michael D Ter-Avanesyan
Journal:  BMC Mol Biol       Date:  2009-06-22       Impact factor: 2.946

9.  Molecular dissection of translation termination mechanism identifies two new critical regions in eRF1.

Authors:  Isabelle Hatin; Celine Fabret; Jean-Pierre Rousset; Olivier Namy
Journal:  Nucleic Acids Res       Date:  2009-01-27       Impact factor: 16.971

10.  Partial methylation at Am100 in 18S rRNA of baker's yeast reveals ribosome heterogeneity on the level of eukaryotic rRNA modification.

Authors:  Markus Buchhaupt; Sunny Sharma; Stefanie Kellner; Stefanie Oswald; Melanie Paetzold; Christian Peifer; Peter Watzinger; Jens Schrader; Mark Helm; Karl-Dieter Entian
Journal:  PLoS One       Date:  2014-02-28       Impact factor: 3.240

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