Literature DB >> 24183695

Fluorescence spectroscopy of rhodopsins: insights and approaches.

Ulrike Alexiev1, David L Farrens2.   

Abstract

Fluorescence spectroscopy has become an established tool at the interface of biology, chemistry and physics because of its exquisite sensitivity and recent technical advancements. However, rhodopsin proteins present the fluorescence spectroscopist with a unique set of challenges and opportunities due to the presence of the light-sensitive retinal chromophore. This review briefly summarizes some approaches that have successfully met these challenges and the novel insights they have yielded about rhodopsin structure and function. We start with a brief overview of fluorescence fundamentals and experimental methodologies, followed by more specific discussions of technical challenges rhodopsin proteins present to fluorescence studies. Finally, we end by discussing some of the unique insights that have been gained specifically about visual rhodopsin and its interactions with affiliate proteins through the use of fluorescence spectroscopy. This article is part of a Special Issue entitled: Retinal Proteins - You can teach an old dog new tricks.
Copyright © 2013 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Fluorescence spectroscopy; Retinal protein; Site-directed fluorescence labeling; Visual rhodopsin

Mesh:

Substances:

Year:  2013        PMID: 24183695      PMCID: PMC3965647          DOI: 10.1016/j.bbabio.2013.10.008

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  140 in total

1.  Effect of channel mutations on the uptake and release of the retinal ligand in opsin.

Authors:  Ronny Piechnick; Eglof Ritter; Peter W Hildebrand; Oliver P Ernst; Patrick Scheerer; Klaus Peter Hofmann; Martin Heck
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

2.  Transducin-alpha C-terminal peptide binding site consists of C-D and E-F loops of rhodopsin.

Authors:  S Acharya; Y Saad; S S Karnik
Journal:  J Biol Chem       Date:  1997-03-07       Impact factor: 5.157

3.  Light-activated rhodopsin induces structural binding motif in G protein alpha subunit.

Authors:  O G Kisselev; J Kao; J W Ponder; Y C Fann; N Gautam; G R Marshall
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

4.  A theory of fluorescence polarization decay in membranes.

Authors:  K Kinosita; S Kawato; A Ikegami
Journal:  Biophys J       Date:  1977-12       Impact factor: 4.033

5.  A key agonist-induced conformational change in the cannabinoid receptor CB1 is blocked by the allosteric ligand Org 27569.

Authors:  Jonathan F Fay; David L Farrens
Journal:  J Biol Chem       Date:  2012-07-30       Impact factor: 5.157

6.  Characterization of membrane protein non-native states. 1. Extent of unfolding and aggregation of rhodopsin in the presence of chemical denaturants.

Authors:  Arpana Dutta; Kalyan C Tirupula; Ulrike Alexiev; Judith Klein-Seetharaman
Journal:  Biochemistry       Date:  2010-08-03       Impact factor: 3.162

Review 7.  Activation and molecular recognition of the GPCR rhodopsin--insights from time-resolved fluorescence depolarisation and single molecule experiments.

Authors:  Tai-Yang Kim; Thomas Schlieter; Sebastian Haase; Ulrike Alexiev
Journal:  Eur J Cell Biol       Date:  2011-07-30       Impact factor: 4.492

8.  Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy.

Authors:  R Henderson; J M Baldwin; T A Ceska; F Zemlin; E Beckmann; K H Downing
Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

9.  High-throughput protein structural analysis using site-directed fluorescence labeling and the bimane derivative (2-pyridyl)dithiobimane.

Authors:  Steven E Mansoor; David L Farrens
Journal:  Biochemistry       Date:  2004-07-27       Impact factor: 3.162

10.  Efficient coupling of transducin to monomeric rhodopsin in a phospholipid bilayer.

Authors:  Matthew R Whorton; Beata Jastrzebska; Paul S-H Park; Dimitrios Fotiadis; Andreas Engel; Krzysztof Palczewski; Roger K Sunahara
Journal:  J Biol Chem       Date:  2007-11-22       Impact factor: 5.157

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  22 in total

1.  SPECTRAL METHODS FOR STUDY OF THE G-PROTEIN-COUPLED RECEPTOR RHODOPSIN. I. VIBRATIONAL AND ELECTRONIC SPECTROSCOPY.

Authors:  A V Struts; A V Barmasov; M F Brown
Journal:  Opt Spectrosc       Date:  2015-05-27       Impact factor: 0.891

2.  Biochemical Analysis of Microbial Rhodopsins.

Authors:  Julia A Maresca; Jessica L Keffer; Kelsey J Miller
Journal:  Curr Protoc Microbiol       Date:  2016-05-06

3.  Light and pH-induced Changes in Structure and Accessibility of Transmembrane Helix B and Its Immediate Environment in Channelrhodopsin-2.

Authors:  Pierre Volz; Nils Krause; Jens Balke; Constantin Schneider; Maria Walter; Franziska Schneider; Ramona Schlesinger; Ulrike Alexiev
Journal:  J Biol Chem       Date:  2016-06-06       Impact factor: 5.157

4.  Novel fluorescent GPCR biosensor detects retinal equilibrium binding to opsin and active G protein and arrestin signaling conformations.

Authors:  Christopher T Schafer; Anthony Shumate; David L Farrens
Journal:  J Biol Chem       Date:  2020-10-06       Impact factor: 5.157

5.  Bioorthogonal fluorescent labeling of functional G-protein-coupled receptors.

Authors:  He Tian; Saranga Naganathan; Manija A Kazmi; Thue W Schwartz; Thomas P Sakmar; Thomas Huber
Journal:  Chembiochem       Date:  2014-07-18       Impact factor: 3.164

Review 6.  Molecular Biology of Microbial Rhodopsins.

Authors:  Martin Engelhard
Journal:  Methods Mol Biol       Date:  2022

Review 7.  Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.

Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

8.  Using total internal reflection fluorescence microscopy to visualize rhodopsin-containing cells.

Authors:  J L Keffer; C R Sabanayagam; M E Lee; E F DeLong; M W Hahn; J A Maresca
Journal:  Appl Environ Microbiol       Date:  2015-03-13       Impact factor: 4.792

9.  Novel fluorescent GPCR biosensor detects retinal equilibrium binding to opsin and active G protein and arrestin signaling conformations.

Authors:  Christopher T Schafer; Anthony Shumate; David L Farrens
Journal:  J Biol Chem       Date:  2020-12-18       Impact factor: 5.157

10.  Stereospecific modulation of dimeric rhodopsin.

Authors:  Tamar Getter; Sahil Gulati; Remy Zimmerman; Yuanyuan Chen; Frans Vinberg; Krzysztof Palczewski
Journal:  FASEB J       Date:  2019-05-23       Impact factor: 5.834

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