Literature DB >> 16593054

Relative orientation of close-packed beta-pleated sheets in proteins.

C Chothia1, J Janin.   

Abstract

When beta-pleated sheets pack face to face in proteins, the angle between the strand directions of the two beta-sheets is observed to be near -30 degrees . We propose a simple model for beta-sheet-to-beta-sheet packing in concanavalin A, plastocyanin, gamma-crystallin, superoxide dismutase, prealbumin, and the immunoglobin fragment V(REI). This model shows how the observed relative orientation of two packed beta-sheets is a consequence of (i) the rows of side chains at the interface being approximately aligned and (ii) the beta-sheet having a right-handed twist. The special amino acid composition of residues at the beta-sheet-to-beta-sheet interfaces makes the contact surfaces essentially smooth and hydrophobic.

Year:  1981        PMID: 16593054      PMCID: PMC319745          DOI: 10.1073/pnas.78.7.4146

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  The covalent and three-dimensional structure of concanavalin A. IV. Atomic coordinates, hydrogen bonding, and quaternary structure.

Authors:  G N Reeke; J W Becker; G M Edelman
Journal:  J Biol Chem       Date:  1975-02-25       Impact factor: 5.157

2.  Similarity of three-dimensional structure between the immunoglobulin domain and the copper, zinc superoxide dismutase subunit.

Authors:  J S Richardson; D C Richardson; K A Thomas; E W Silverton; D R Davies
Journal:  J Mol Biol       Date:  1976-04-05       Impact factor: 5.469

3.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

4.  Structural patterns in globular proteins.

Authors:  M Levitt; C Chothia
Journal:  Nature       Date:  1976-06-17       Impact factor: 49.962

5.  Surface and inside volumes in globular proteins.

Authors:  J Janin
Journal:  Nature       Date:  1979-02-08       Impact factor: 49.962

6.  Structure of prealbumin: secondary, tertiary and quaternary interactions determined by Fourier refinement at 1.8 A.

Authors:  C C Blake; M J Geisow; S J Oatley; B Rérat; C Rérat
Journal:  J Mol Biol       Date:  1978-05-25       Impact factor: 5.469

7.  Analysis and prediction of protein beta-sheet structures by a combinatorial approach.

Authors:  F E Cohen; M J Sternberg; W R Taylor
Journal:  Nature       Date:  1980-06-05       Impact factor: 49.962

8.  Conformational preferences of amino acids in globular proteins.

Authors:  M Levitt
Journal:  Biochemistry       Date:  1978-10-03       Impact factor: 3.162

9.  Conformation of amino acid side-chains in proteins.

Authors:  J Janin; S Wodak
Journal:  J Mol Biol       Date:  1978-11-05       Impact factor: 5.469

10.  Crystal structure of bovine Cu,Zn superoxide dismutase at 3 A resolution: chain tracing and metal ligands.

Authors:  J Richardson; K A Thomas; B H Rubin; D C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  1975-04       Impact factor: 11.205

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  21 in total

1.  Mechanics and dynamics of B1 domain of protein G: role of packing and surface hydrophobic residues.

Authors:  M A Ceruso; A Amadei; A Di Nola
Journal:  Protein Sci       Date:  1999-01       Impact factor: 6.725

2.  Constraint-based assembly of tertiary protein structures from secondary structure elements.

Authors:  K Yue; K A Dill
Journal:  Protein Sci       Date:  2000-10       Impact factor: 6.725

3.  Tilt, twist, and coiling in beta-barrel membrane proteins: relation to infrared dichroism.

Authors:  T Páli; D Marsh
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

4.  Structural principles of parallel beta-barrels in proteins.

Authors:  I Lasters; S J Wodak; P Alard; E van Cutsem
Journal:  Proc Natl Acad Sci U S A       Date:  1988-05       Impact factor: 11.205

5.  Engineering of betabellin-15D: a 64 residue beta sheet protein that forms long narrow multimeric fibrils.

Authors:  A Lim; M J Saderholm; A M Makhov; M Kroll; Y Yan; L Perera; J D Griffith; B W Erickson
Journal:  Protein Sci       Date:  1998-07       Impact factor: 6.725

6.  Coupling backbone flexibility and amino acid sequence selection in protein design.

Authors:  A Su; S L Mayo
Journal:  Protein Sci       Date:  1997-08       Impact factor: 6.725

Review 7.  The role of β-sheets in the structure and assembly of keratins.

Authors:  R D Bruce Fraser; David A D Parry
Journal:  Biophys Rev       Date:  2009-01-23

Review 8.  SH3 domains: modules of protein-protein interactions.

Authors:  Natalya Kurochkina; Udayan Guha
Journal:  Biophys Rev       Date:  2012-06-20

9.  Structural invariants of antigen binding: comparison of immunoglobulin VL-VH and VL-VL domain dimers.

Authors:  J Novotný; E Haber
Journal:  Proc Natl Acad Sci U S A       Date:  1985-07       Impact factor: 11.205

10.  Rules for connectivity of secondary structure elements in protein: Two-layer αβ sandwiches.

Authors:  Shintaro Minami; George Chikenji; Motonori Ota
Journal:  Protein Sci       Date:  2017-09-19       Impact factor: 6.725

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