Literature DB >> 6991952

Analysis and prediction of protein beta-sheet structures by a combinatorial approach.

F E Cohen, M J Sternberg, W R Taylor.   

Abstract

Analysis of beta-sheet sandwiches (for example immunoglobulin domains) suggests an algorithm that successfully predicts the tertiary fold of these proteins from their sequence and secondary structure. We propose tertiary structures for beta 2-microglobulin and an HLA-B7 antigen fragment. Topological rules are presented that markedly reduce the number of folds for proteins in which a-helices pack against a parallel beta-sheet.

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Year:  1980        PMID： 6991952     DOI： 10.1038/285378a0

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


  17 in total

1.  Helix-bundle membrane protein fold templates.

Authors:  J U Bowie
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

2.  Evidence for assembly of prions with left-handed beta-helices into trimers.

Authors:  Cédric Govaerts; Holger Wille; Stanley B Prusiner; Fred E Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-21       Impact factor: 11.205

3.  Protein topology from predicted residue contacts.

Authors:  William R Taylor; David T Jones; Michael I Sadowski
Journal:  Protein Sci       Date:  2011-12-21       Impact factor: 6.725

4.  Relative orientation of close-packed beta-pleated sheets in proteins.

Authors:  C Chothia; J Janin
Journal:  Proc Natl Acad Sci U S A       Date:  1981-07       Impact factor: 11.205

5.  Coupling backbone flexibility and amino acid sequence selection in protein design.

Authors:  A Su; S L Mayo
Journal:  Protein Sci       Date:  1997-08       Impact factor: 6.725

6.  Systematic solution to homo-oligomeric structures determined by NMR.

Authors:  Jeffrey W Martin; Pei Zhou; Bruce R Donald
Journal:  Proteins       Date:  2015-02-05

7.  Topological distribution of four-alpha-helix bundles.

Authors:  S R Presnell; F E Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

8.  Analysis of structural similarities between brain Thy-1 antigen and immunoglobulin domains. Evidence for an evolutionary relationship and a hypothesis for its functional significance.

Authors:  F E Cohen; J Novotný; M J Sternberg; D G Campbell; A F Williams
Journal:  Biochem J       Date:  1981-04-01       Impact factor: 3.857

9.  Evolutionary relationship between the T3 chains of the T-cell receptor complex and the immunoglobulin supergene family.

Authors:  D P Gold; H Clevers; B Alarcon; S Dunlap; J Novotny; A F Williams; C Terhorst
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

Review 10.  Folding by numbers: primary sequence statistics and their use in studying protein folding.

Authors:  Brent Wathen; Zongchao Jia
Journal:  Int J Mol Sci       Date:  2009-04-08       Impact factor: 6.208
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