Literature DB >> 9684887

Engineering of betabellin-15D: a 64 residue beta sheet protein that forms long narrow multimeric fibrils.

A Lim1, M J Saderholm, A M Makhov, M Kroll, Y Yan, L Perera, J D Griffith, B W Erickson.   

Abstract

The betabellin target structure is a beta-sandwich protein consisting of two 32 residue beta-sheets packed against one another by interaction of their hydrophobic faces. The 32 residue chain of betabellin-15S (HSLTAKIpkLTFSIAphTYTCAV pkYTAKVSH, where p=DPro, k=DLys, and h=DHis) did not fold in water at pH 6.5. Air oxidation of betabellin-15S provided betabellin-15D, the 64 residue disulfide bridged two-chain molecule, which also remained unfolded in water at pH 6.5. By circular dichroic spectropolarimetry, the extent of beta structure observed for betabellin-15D increased with the pH and ionic strength of the solution and the betabellin-15D concentration. By electron microscopy, in 5.0 mM MOPS and 0.25 M NaCl at pH 6.9, betabellin-15D formed long narrow multimeric fibrils. A molecular model was constructed to show that the dimensions of these betabellin-15D fibrils are consistent with a single row of beta-sandwich molecules joined by multiple intersheet H-bonds.

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Year:  1998        PMID: 9684887      PMCID: PMC2144068          DOI: 10.1002/pro.5560070708

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  29 in total

1.  Relative orientation of close-packed beta-pleated sheets in proteins.

Authors:  C Chothia; J Janin
Journal:  Proc Natl Acad Sci U S A       Date:  1981-07       Impact factor: 11.205

2.  De novo protein design: fully automated sequence selection.

Authors:  B I Dahiyat; S L Mayo
Journal:  Science       Date:  1997-10-03       Impact factor: 47.728

3.  Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes.

Authors:  J W Ponder; F M Richards
Journal:  J Mol Biol       Date:  1987-02-20       Impact factor: 5.469

4.  Engineering of betabellin 14D: disulfide-induced folding of a beta-sheet protein.

Authors:  Y Yan; B W Erickson
Journal:  Protein Sci       Date:  1994-07       Impact factor: 6.725

5.  De novo design of beta-sheet proteins.

Authors:  M H Hecht
Journal:  Proc Natl Acad Sci U S A       Date:  1994-09-13       Impact factor: 11.205

6.  Design, synthesis, and binding characteristics of an opiate receptor mimetic peptide.

Authors:  W Kullmann
Journal:  J Med Chem       Date:  1984-02       Impact factor: 7.446

7.  Analysis of the tertiary structure of protein beta-sheet sandwiches.

Authors:  F E Cohen; M J Sternberg; W R Taylor
Journal:  J Mol Biol       Date:  1981-05-25       Impact factor: 5.469

8.  De novo design of native proteins: characterization of proteins intended to fold into antiparallel, rop-like, four-helix bundles.

Authors:  S F Betz; P A Liebman; W F DeGrado
Journal:  Biochemistry       Date:  1997-03-04       Impact factor: 3.162

9.  Conformation of a water-soluble beta-sheet model peptide. A circular dichroism and Fourier-transform infrared spectroscopic study of double D-amino acid replacements.

Authors:  E Krause; M Beyermann; H Fabian; M Dathe; S Rothemund; M Bienert
Journal:  Int J Pept Protein Res       Date:  1996-12

10.  Deuterium exchange of alpha-helices and beta-sheets as monitored by electrospray ionization mass spectrometry.

Authors:  D S Wagner; L G Melton; Y Yan; B W Erickson; R J Anderegg
Journal:  Protein Sci       Date:  1994-08       Impact factor: 6.725

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  8 in total

1.  De novo amyloid proteins from designed combinatorial libraries.

Authors:  M W West; W Wang; J Patterson; J D Mancias; J R Beasley; M H Hecht
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  Hierarchical self-assembly of chiral rod-like molecules as a model for peptide beta -sheet tapes, ribbons, fibrils, and fibers.

Authors:  A Aggeli; I A Nyrkova; M Bell; R Harding; L Carrick; T C McLeish; A N Semenov; N Boden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-09       Impact factor: 11.205

3.  Assembly and kinetic folding pathways of a tetrameric beta-sheet complex: molecular dynamics simulations on simplified off-lattice protein models.

Authors:  Hyunbum Jang; Carol K Hall; Yaoqi Zhou
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

4.  Molecular organization of amyloid protofilament-like assembly of betabellin 15D: helical array of beta-sandwiches.

Authors:  Hideyo Inouye; Jeremy E Bond; Sean P Deverin; Amareth Lim; Catherine E Costello; Daniel A Kirschner
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

5.  Metal-ion binding and limited proteolysis of betabellin 15D, a designed beta-sandwich protein.

Authors:  P A Guy; R J Anderegg; A Lim; M J Saderholm; Y Yan; B W Erickson
Journal:  J Am Soc Mass Spectrom       Date:  1999-10       Impact factor: 3.109

Review 6.  Protein Design: From the Aspect of Water Solubility and Stability.

Authors:  Rui Qing; Shilei Hao; Eva Smorodina; David Jin; Arthur Zalevsky; Shuguang Zhang
Journal:  Chem Rev       Date:  2022-08-03       Impact factor: 72.087

Review 7.  De novo protein design, a retrospective.

Authors:  Ivan V Korendovych; William F DeGrado
Journal:  Q Rev Biophys       Date:  2020-02-11       Impact factor: 5.318

8.  Prediction and analysis of antibody amyloidogenesis from sequences.

Authors:  Chyn Liaw; Chun-Wei Tung; Shinn-Ying Ho
Journal:  PLoS One       Date:  2013-01-07       Impact factor: 3.240

  8 in total

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