Literature DB >> 16582617

Counting divisions in a human somatic cell tree: how, what and why?

Darryl Shibata1, Simon Tavaré.   

Abstract

The billions of cells within an individual can be organized by genealogy into a single somatic cell tree that starts from the zygote and ends with present day cells. In theory, this tree can be reconstructed from replication errors that surreptitiously record divisions and ancestry. Such a molecular clock approach is currently impractical because somatic mutations are rare, but more feasible measurements are possible by substituting instead the 5' to 3' order of epigenetic modifications such as CpG methylation. Epigenetic somatic errors are readily detected as age-related changes in methylation, which suggests certain adult stem cells divide frequently and "compete" for survival within niches. Potentially the genealogy of any human cell may be reconstructed without prior experimental manipulation by merely reading histories recorded in their genomes.

Entities:  

Mesh:

Year:  2006        PMID: 16582617     DOI: 10.4161/cc.5.6.2570

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  28 in total

Review 1.  Mutation and epigenetic molecular clocks in cancer.

Authors:  Darryl Shibata
Journal:  Carcinogenesis       Date:  2010-11-12       Impact factor: 4.944

2.  Inferring average generation via division-linked labeling.

Authors:  Tom S Weber; Leïla Perié; Ken R Duffy
Journal:  J Math Biol       Date:  2016-01-05       Impact factor: 2.259

3.  Sample path properties of the average generation of a Bellman-Harris process.

Authors:  Gianfelice Meli; Tom S Weber; Ken R Duffy
Journal:  J Math Biol       Date:  2019-05-08       Impact factor: 2.259

Review 4.  Molecular tumor clocks to study the evolution of drug resistance.

Authors:  Darryl Shibata
Journal:  Mol Pharm       Date:  2011-07-12       Impact factor: 4.939

5.  Aberrant intestinal stem cell lineage dynamics in Peutz-Jeghers syndrome and familial adenomatous polyposis consistent with protracted clonal evolution in the crypt.

Authors:  Danielle Langeveld; Marnix Jansen; D V de Boer; Mariska van Sprundel; Lodewijk A A Brosens; Folkert H Morsink; Francis M Giardiello; G Johan A Offerhaus; Wendy W J de Leng
Journal:  Gut       Date:  2011-09-22       Impact factor: 23.059

6.  The MiAge Calculator: a DNA methylation-based mitotic age calculator of human tissue types.

Authors:  Ahrim Youn; Shuang Wang
Journal:  Epigenetics       Date:  2018-02-06       Impact factor: 4.528

Review 7.  Stem cell dynamics in homeostasis and cancer of the intestine.

Authors:  Louis Vermeulen; Hugo J Snippert
Journal:  Nat Rev Cancer       Date:  2014-06-12       Impact factor: 60.716

8.  Genome sequencing of normal cells reveals developmental lineages and mutational processes.

Authors:  Meritxell Huch; Ruben van Boxtel; Wouter Karthaus; Sam Behjati; David C Wedge; Asif U Tamuri; Inigo Martincorena; Mia Petljak; Ludmil B Alexandrov; Gunes Gundem; Patrick S Tarpey; Sophie Roerink; Joyce Blokker; Mark Maddison; Laura Mudie; Ben Robinson; Serena Nik-Zainal; Peter Campbell; Nick Goldman; Marc van de Wetering; Edwin Cuppen; Hans Clevers; Michael R Stratton
Journal:  Nature       Date:  2014-06-29       Impact factor: 49.962

Review 9.  Stem cell chronicles: autobiographies within genomes.

Authors:  Darryl Shibata; Simon Tavaré
Journal:  Stem Cell Rev       Date:  2007-01       Impact factor: 5.739

Review 10.  Declining cellular fitness with age promotes cancer initiation by selecting for adaptive oncogenic mutations.

Authors:  Andriy Marusyk; James DeGregori
Journal:  Biochim Biophys Acta       Date:  2007-10-12
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.