Literature DB >> 17873386

Stem cell chronicles: autobiographies within genomes.

Darryl Shibata1, Simon Tavaré.   

Abstract

Human stem cell studies are difficult because many of the powerful experimental approaches that mark and follow stem cells and their progeny are impractical. Moreover, humans are long-lived, and it would literally take a lifetime to follow stem cell fates prospectively. Considering these hurdles, an ideal method would not require prior experimental manipulations but still allow "observations" of human stem cells from birth to death. The purpose of this review is to outline how histories or fates are likely to be surreptitiously recorded within somatic cell genomes by replication errors (molecular clock hypothesis). It may be possible to reconstruct stem cell lifetimes by measuring the random somatic changes that accumulate within their genomes, or the genomes of their more-easy-to-identify progeny.

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Year:  2007        PMID: 17873386     DOI: 10.1007/s12015-007-0022-6

Source DB:  PubMed          Journal:  Stem Cell Rev        ISSN: 1550-8943            Impact factor:   5.739


  25 in total

1.  Physiological migration of hematopoietic stem and progenitor cells.

Authors:  D E Wright; A J Wagers; A P Gulati; F L Johnson; I L Weissman
Journal:  Science       Date:  2001-11-30       Impact factor: 47.728

2.  Investigating stem cells in human colon by using methylation patterns.

Authors:  Y Yatabe; S Tavaré; D Shibata
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

3.  HOW MANY CELL-GENERATIONS?

Authors:  H E KAY
Journal:  Lancet       Date:  1965-08-28       Impact factor: 79.321

Review 4.  Epigenetic reprogramming in mammals.

Authors:  Hugh D Morgan; Fátima Santos; Kelly Green; Wendy Dean; Wolf Reik
Journal:  Hum Mol Genet       Date:  2005-04-15       Impact factor: 6.150

Review 5.  Counting divisions in a human somatic cell tree: how, what and why?

Authors:  Darryl Shibata; Simon Tavaré
Journal:  Cell Cycle       Date:  2006-03-15       Impact factor: 4.534

6.  Increased cell division as a cause of human cancer.

Authors:  S Preston-Martin; M C Pike; R K Ross; P A Jones; B E Henderson
Journal:  Cancer Res       Date:  1990-12-01       Impact factor: 12.701

7.  Cell division is required for de novo methylation of CpG islands in bladder cancer cells.

Authors:  Mihaela Velicescu; Daniel J Weisenberger; Felicidad A Gonzales; Yvonne C Tsai; Carvell T Nguyen; Peter A Jones
Journal:  Cancer Res       Date:  2002-04-15       Impact factor: 12.701

Review 8.  Stem cells: attributes, cycles, spirals, pitfalls and uncertainties. Lessons for and from the crypt.

Authors:  C S Potten; M Loeffler
Journal:  Development       Date:  1990-12       Impact factor: 6.868

9.  The stem cell population of the human colon crypt: analysis via methylation patterns.

Authors:  Pierre Nicolas; Kyoung-Mee Kim; Darryl Shibata; Simon Tavaré
Journal:  PLoS Comput Biol       Date:  2007-01-02       Impact factor: 4.475

10.  Age-related human small intestine methylation: evidence for stem cell niches.

Authors:  Jung Yeon Kim; Kimberly D Siegmund; Simon Tavaré; Darryl Shibata
Journal:  BMC Med       Date:  2005-06-23       Impact factor: 8.775

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  5 in total

Review 1.  Inferring human stem cell behaviour from epigenetic drift.

Authors:  D Shibata
Journal:  J Pathol       Date:  2009-01       Impact factor: 7.996

2.  Decoding cell lineage from acquired mutations using arbitrary deep sequencing.

Authors:  Cheryl A Carlson; Arnold Kas; Robert Kirkwood; Laura E Hays; Bradley D Preston; Stephen J Salipante; Marshall S Horwitz
Journal:  Nat Methods       Date:  2011-11-27       Impact factor: 28.547

3.  A new timepiece: an epigenetic mitotic clock.

Authors:  Brock C Christensen; Karl T Kelsey
Journal:  Genome Biol       Date:  2016-10-19       Impact factor: 13.583

4.  Use of somatic mutations to quantify random contributions to mouse development.

Authors:  Wenyu Zhou; Yunbing Tan; Donovan J Anderson; Eva M Crist; Hannele Ruohola-Baker; Stephen J Salipante; Marshall S Horwitz
Journal:  BMC Genomics       Date:  2013-01-18       Impact factor: 3.969

5.  Amplification of multiple genomic loci from single cells isolated by laser micro-dissection of tissues.

Authors:  Dan Frumkin; Adam Wasserstrom; Shalev Itzkovitz; Alon Harmelin; Gideon Rechavi; Ehud Shapiro
Journal:  BMC Biotechnol       Date:  2008-02-20       Impact factor: 2.563

  5 in total

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