Literature DB >> 16552447

Anti-stokes Raman study of vibrational cooling dynamics in the primary photochemistry of rhodopsin.

Judy E Kim1, Richard A Mathies.   

Abstract

Picosecond Stokes and anti-Stokes Raman spectra are used to probe the structural dynamics and reactive energy flow in the primary cis-to-trans isomerization reaction of rhodopsin. The appearance of characteristic ethylenic, hydrogen out-of-plane (HOOP), and low-wavenumber photoproduct bands in the Raman spectra is instrument-response-limited, consistent with a subpicosecond product appearance time. Intense high and low-frequency anti-Stokes peaks demonstrate that the all-trans photoproduct is produced vibrationally hot on the ground-state surface. Specifically, the low-frequency modes at 282, 350, and 477 cm(-1) are highly vibrationally excited (T > 2000 K) immediately following isomerization, revealing that these low-frequency motions directly participate in the reactive curve-crossing process. The anti-Stokes modes are characterized by a approximately 2.5 ps temporal decay that coincides with the conversion of photorhodopsin to bathorhodopsin. This correspondence shows that the photo-to-batho transition is a ground-state cooling process and that energy storage in the primary visual photoproduct is complete on the picosecond time scale. Finally, unique Stokes vibrations at 290, 992, 1254, 1290, and 1569 cm(-1) arising from the excited state of rhodopsin are observed only at 0 ps delay.

Entities:  

Year:  2002        PMID: 16552447      PMCID: PMC1407760          DOI: 10.1021/jp021069r

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  12 in total

Review 1.  Photons, femtoseconds and dipolar interactions: a molecular picture of the primary events in vision.

Authors:  R A Mathies
Journal:  Novartis Found Symp       Date:  1999

2.  Wavelength dependent cis-trans isomerization in vision.

Authors:  J E Kim; M J Tauber; R A Mathies
Journal:  Biochemistry       Date:  2001-11-20       Impact factor: 3.162

3.  Rapid-flow resonance Raman spectroscopy of photolabile molecules: rhodopsin and isorhodopsin.

Authors:  R Mathies; A R Oseroff; L Stryer
Journal:  Proc Natl Acad Sci U S A       Date:  1976-01       Impact factor: 11.205

4.  Assignment of fingerprint vibrations in the resonance Raman spectra of rhodopsin, isorhodopsin, and bathorhodopsin: implications for chromophore structure and environment.

Authors:  I Palings; J A Pardoen; E van den Berg; C Winkel; J Lugtenburg; R A Mathies
Journal:  Biochemistry       Date:  1987-05-05       Impact factor: 3.162

5.  Calculation of pi-pi excited state conformations and vibronic structure of retinal and related molecules.

Authors:  A Warshel; M Karplus
Journal:  J Am Chem Soc       Date:  1974-09-04       Impact factor: 15.419

6.  Rhodopsin. Purification and recombination with phospholipids assayed by the metarhodopsin I leads to metarhodopsin II transition.

Authors:  M L Applebury; D M Zuckerman; A A Lamola; T M Jovin
Journal:  Biochemistry       Date:  1974-08-13       Impact factor: 3.162

7.  Vibrationally coherent photochemistry in the femtosecond primary event of vision.

Authors:  Q Wang; R W Schoenlein; L A Peteanu; R A Mathies; C V Shank
Journal:  Science       Date:  1994-10-21       Impact factor: 47.728

8.  Assignment and interpretation of hydrogen out-of-plane vibrations in the resonance Raman spectra of rhodopsin and bathorhodopsin.

Authors:  G Eyring; B Curry; A Broek; J Lugtenburg; R Mathies
Journal:  Biochemistry       Date:  1982-01-19       Impact factor: 3.162

9.  Energy uptake in the first step of visual excitation.

Authors:  A Cooper
Journal:  Nature       Date:  1979-11-29       Impact factor: 49.962

10.  Direct observation of cooling of heme upon photodissociation of carbonmonoxy myoglobin.

Authors:  Y Mizutani; T Kitagawa
Journal:  Science       Date:  1997-10-17       Impact factor: 47.728

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  13 in total

1.  Analysis of the mode-specific excited-state energy distribution and wavelength-dependent photoreaction quantum yield in rhodopsin.

Authors:  Judy E Kim; Michael J Tauber; Richard A Mathies
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

2.  The molecular basis for the high photosensitivity of rhodopsin.

Authors:  Robert S H Liu; Leticia U Colmenares
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

3.  Picosecond dynamics of G-protein coupled receptor activation in rhodopsin from time-resolved UV resonance Raman spectroscopy.

Authors:  Judy E Kim; Duohai Pan; Richard A Mathies
Journal:  Biochemistry       Date:  2003-05-13       Impact factor: 3.162

4.  Local vibrational coherences drive the primary photochemistry of vision.

Authors:  Philip J M Johnson; Alexei Halpin; Takefumi Morizumi; Valentyn I Prokhorenko; Oliver P Ernst; R J Dwayne Miller
Journal:  Nat Chem       Date:  2015-11-16       Impact factor: 24.427

5.  Femtosecond broadband stimulated Raman spectroscopy: Apparatus and methods.

Authors:  David W McCamant; Philipp Kukura; Sangwoon Yoon; Richard A Mathies
Journal:  Rev Sci Instrum       Date:  2004-11       Impact factor: 1.523

6.  Terahertz spectroscopy of bacteriorhodopsin and rhodopsin: similarities and differences.

Authors:  R Balu; H Zhang; E Zukowski; J-Y Chen; A G Markelz; S K Gregurick
Journal:  Biophys J       Date:  2008-01-16       Impact factor: 4.033

7.  Subpicosecond midinfrared spectroscopy of the Pfr reaction of phytochrome Agp1 from Agrobacterium tumefaciens.

Authors:  Christian Schumann; Ruth Gross; Matthias M N Wolf; Rolf Diller; Norbert Michael; Tilman Lamparter
Journal:  Biophys J       Date:  2008-01-11       Impact factor: 4.033

8.  Coherent processes in formation of primary products of rhodopsin photolysis.

Authors:  O A Smitienko; I V Shelaev; F E Gostev; T B Fel'dman; V A Nadtochenko; O M Sarkisov; M A Ostrovsky
Journal:  Dokl Biochem Biophys       Date:  2008 Jul-Aug       Impact factor: 0.788

9.  Re-evaluation of rhodopsin's relaxation kinetics determined from femtosecond stimulated Raman lineshapes.

Authors:  David W McCamant
Journal:  J Phys Chem B       Date:  2011-06-29       Impact factor: 2.991

10.  Insights into Protein Structure and Dynamics by Ultraviolet and Visible Resonance Raman Spectroscopy.

Authors:  Ignacio López-Peña; Brian S Leigh; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2015-07-29       Impact factor: 3.162

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