Literature DB >> 16549804

Exact solution of the Eigen model with general fitness functions and degradation rates.

David B Saakian1, Chin-Kun Hu.   

Abstract

We present an exact solution of Eigen's quasispecies model with a general degradation rate and fitness functions, including a square root decrease of fitness with increasing Hamming distance from the wild type. The found behavior of the model with a degradation rate is analogous to a viral quasispecies under attack by the immune system of the host. Our exact solutions also revise the known results of neutral networks in quasispecies theory. To explain the existence of mutants with large Hamming distances from the wild type, we propose three different modifications of the Eigen model: mutation landscape, multiple adjacent mutations, and frequency-dependent fitness in which the steady-state solution shows a multicenter behavior.

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Year:  2006        PMID: 16549804      PMCID: PMC1458773          DOI: 10.1073/pnas.0504924103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

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Authors:  J Swetina; P Schuster
Journal:  Biophys Chem       Date:  1982-12       Impact factor: 2.352

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Authors:  Claus O Wilke
Journal:  BMC Evol Biol       Date:  2005-08-17       Impact factor: 3.260

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  16 in total

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2.  Pathways to extinction: beyond the error threshold.

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5.  Lethal mutagenesis in a structured environment.

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Authors:  Enrique Muñoz; Jeong-Man Park; Michael W Deem
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7.  Stochastic simulations suggest that HIV-1 survives close to its error threshold.

Authors:  Kushal Tripathi; Rajesh Balagam; Nisheeth K Vishnoi; Narendra M Dixit
Journal:  PLoS Comput Biol       Date:  2012-09-13       Impact factor: 4.475

8.  Lethal mutants and truncated selection together solve a paradox of the origin of life.

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10.  Dynamics of preventive vs post-diagnostic cancer control using low-impact measures.

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