Literature DB >> 8552647

Smoothness within ruggedness: the role of neutrality in adaptation.

M A Huynen1, P F Stadler, W Fontana.   

Abstract

RNA secondary structure folding algorithms predict the existence of connected networks of RNA sequences with identical structure. On such networks, evolving populations split into subpopulations, which diffuse independently in sequence space. This demands a distinction between two mutation thresholds: one at which genotypic information is lost and one at which phenotypic information is lost. In between, diffusion enables the search of vast areas in genotype space while still preserving the dominant phenotype. By this dynamic the success of phenotypic adaptation becomes much less sensitive to the initial conditions in genotype space.

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Year:  1996        PMID: 8552647      PMCID: PMC40245          DOI: 10.1073/pnas.93.1.397

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  Some thoughts on bacterial classification.

Authors:  P H SNEATH
Journal:  J Gen Microbiol       Date:  1957-08

2.  Directed evolution of an RNA enzyme.

Authors:  A A Beaudry; G F Joyce
Journal:  Science       Date:  1992-07-31       Impact factor: 47.728

3.  Identity elements for specific aminoacylation of yeast tRNA(Asp) by cognate aspartyl-tRNA synthetase.

Authors:  J Pütz; J D Puglisi; C Florentz; R Giegé
Journal:  Science       Date:  1991-06-21       Impact factor: 47.728

4.  RNA multi-structure landscapes. A study based on temperature dependent partition functions.

Authors:  S Bonhoeffer; J S McCaskill; P F Stadler; P Schuster
Journal:  Eur Biophys J       Date:  1993       Impact factor: 1.733

5.  An RNA motif that binds ATP.

Authors:  M Sassanfar; J W Szostak
Journal:  Nature       Date:  1993-08-05       Impact factor: 49.962

6.  From sequences to shapes and back: a case study in RNA secondary structures.

Authors:  P Schuster; W Fontana; P F Stadler; I L Hofacker
Journal:  Proc Biol Sci       Date:  1994-03-22       Impact factor: 5.349

7.  Physical aspects of evolutionary optimization and adaptation.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1989-09-15

8.  Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

Authors:  M Zuker; P Stiegler
Journal:  Nucleic Acids Res       Date:  1981-01-10       Impact factor: 16.971

Review 9.  The maturation of the immune response.

Authors:  C Berek; M Ziegner
Journal:  Immunol Today       Date:  1993-08

10.  Transplanting a unique allosteric effect from crocodile into human haemoglobin.

Authors:  N H Komiyama; G Miyazaki; J Tame; K Nagai
Journal:  Nature       Date:  1995-01-19       Impact factor: 49.962

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  119 in total

1.  Neutral evolution of mutational robustness.

Authors:  E van Nimwegen; J P Crutchfield; M Huynen
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space.

Authors:  E Bornberg-Bauer; H S Chan
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

3.  Models of experimental evolution: the role of genetic chance and selective necessity.

Authors:  L M Wahl; D C Krakauer
Journal:  Genetics       Date:  2000-11       Impact factor: 4.562

4.  Probability of fixation of an advantageous mutant in a viral quasispecies.

Authors:  Claus O Wilke
Journal:  Genetics       Date:  2003-02       Impact factor: 4.562

5.  Symmetric structures and equifinality of evolution outcomes in simple neural network models.

Authors:  S I Bartsev; O D Bartseva
Journal:  Dokl Biochem Biophys       Date:  2002 Sep-Oct       Impact factor: 0.788

6.  On the evolution of primitive genetic codes.

Authors:  Günter Weberndorfer; Ivo L Hofacker; Peter F Stadler
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

7.  Statistical properties of neutral evolution.

Authors:  Ugo Bastolla; Markus Porto; H Eduardo Roman; Michele Vendruscolo
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

8.  "Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity.

Authors:  Irma Lozada-Chávez; Peter F Stadler; Sonja J Prohaska
Journal:  Orig Life Evol Biosph       Date:  2012-02-10       Impact factor: 1.950

Review 9.  Mathematical modeling of evolution. Solved and open problems.

Authors:  Peter Schuster
Journal:  Theory Biosci       Date:  2010-09-01       Impact factor: 1.919

10.  Pathways to extinction: beyond the error threshold.

Authors:  Susanna C Manrubia; Esteban Domingo; Ester Lázaro
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-06-27       Impact factor: 6.237

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