Literature DB >> 16546375

Water structure and interactions with protein surfaces.

Tanya M Raschke1.   

Abstract

The structure of liquid water and its interaction with biological molecules is a very active area of experimental and theoretical research. The chemically complex surfaces of protein molecules alter the structure of the surrounding layer of hydrating water molecules. The dynamics of hydration water can be detected by a series of experimental techniques, which show that hydration waters typically have slower correlation times than water in bulk. Specific water-mediated interactions in protein complexes have been studied in detail, and these interactions have been incorporated into potential energy functions for protein folding and design. The subtle changes in the structure of hydration water have been investigated by theoretical studies.

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Year:  2006        PMID: 16546375     DOI: 10.1016/j.sbi.2006.03.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  53 in total

1.  Engineering and functional properties of biodegradable pellets developed from various agro-industrial wastes using extrusion technology.

Authors:  Kulsum Jan; C S Riar; D C Saxena
Journal:  J Food Sci Technol       Date:  2015-07-14       Impact factor: 2.701

2.  Decomposition of protein experimental compressibility into intrinsic and hydration shell contributions.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  Biophys J       Date:  2006-09-22       Impact factor: 4.033

3.  Penetration of lipid chains into transmembrane surfaces of membrane proteins: studies with MscL.

Authors:  Joanne Carney; J Malcolm East; Anthony G Lee
Journal:  Biophys J       Date:  2007-02-16       Impact factor: 4.033

4.  Atomistic modeling of collagen proteins in their fibrillar environment.

Authors:  Ian Streeter; Nora H de Leeuw
Journal:  J Phys Chem B       Date:  2010-10-21       Impact factor: 2.991

5.  Minimizing frustration by folding in an aqueous environment.

Authors:  Carla Mattos; A Clay Clark
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

6.  Mapping hydration dynamics around a protein surface.

Authors:  Luyuan Zhang; Lijuan Wang; Ya-Ting Kao; Weihong Qiu; Yi Yang; Oghaghare Okobiah; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

7.  Effects of Acids, Bases, and Heteroatoms on Proximal Radial Distribution Functions for Proteins.

Authors:  Bao Linh Nguyen; B Montgomery Pettitt
Journal:  J Chem Theory Comput       Date:  2015-04-14       Impact factor: 6.006

8.  Cholesterol enhances surface water diffusion of phospholipid bilayers.

Authors:  Chi-Yuan Cheng; Luuk L C Olijve; Ravinath Kausik; Songi Han
Journal:  J Chem Phys       Date:  2014-12-14       Impact factor: 3.488

9.  A peptide's perspective of water dynamics.

Authors:  Ayanjeet Ghosh; Robin M Hochstrasser
Journal:  Chem Phys       Date:  2011-08-11       Impact factor: 2.348

10.  Molecular dynamics of water-mediated interactions of a linear benzimidazole-biphenyl diamidine with the DNA minor groove.

Authors:  Prashanth Athri; W David Wilson
Journal:  J Am Chem Soc       Date:  2009-06-10       Impact factor: 15.419

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