Literature DB >> 16511205

Incorporation of a disaccharide nucleoside into the backbone of double-stranded DNA: crystallization and preliminary X-ray diffraction.

Kristof Van Hecke1, Koen Uytterhoeven, Sergey N Mikhailov, Piet Herdewijn, Luc Van Meervelt.   

Abstract

Incorporation of a disaccharide nucleoside into double-stranded DNA can be considered as a chemical (non-enzymatic) alternative for site-specific cleavage of DNA. Crystals of the sequence d(CGCGAATT*CGCG), where * is an incorporated ribose, were obtained by hanging-drop vapour diffusion and diffracted to 2.6 A. The crystals belong to the orthorhombic space group P222(1), with unit-cell parameters a = 41.52, b = 57.63, c = 81.39 A, indicating a new crystal packing motif for an oligonucleotide dodecamer sequence.

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Year:  2005        PMID： 16511205      PMCID： PMC1991303          DOI： 10.1107/S1744309105030381

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN： 1744-3091


  10 in total

1.  A highly efficient 24-condition matrix for the crystallization of nucleic acid fragments.

Authors:  I Berger; C H Kang; N Sinha; M Wolters; A Rich
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-05-01

2.  Cleavage of DNA without loss of genetic information by incorporation of a disaccharide nucleoside.

Authors:  Koen Nauwelaerts; Karen Vastmans; Matheus Froeyen; Veerle Kempeneers; Jef Rozenski; Helmut Rosemeyer; Arthur Van Aerschot; Roger Busson; Jeffrey C Lacey; Ekaterina Efimtseva; Sergey Mikhailov; Eveline Lescrinier; Piet Herdewijn
Journal:  Nucleic Acids Res       Date:  2003-12-01       Impact factor: 16.971

3.  The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids.

Authors:  H M Berman; W K Olson; D L Beveridge; J Westbrook; A Gelbin; T Demeny; S H Hsieh; A R Srinivasan; B Schneider
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4.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

5.  Likelihood-enhanced fast rotation functions.

Authors:  Laurent C Storoni; Airlie J McCoy; Randy J Read
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6.  CRANK: new methods for automated macromolecular crystal structure solution.

Authors:  Steven R Ness; Rudolf A G de Graaff; Jan Pieter Abrahams; Navraj S Pannu
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7.  Crystal structures of B-DNA with incorporated 2'-deoxy-2'-fluoro-arabino-furanosyl thymines: implications of conformational preorganization for duplex stability.

Authors:  I Berger; V Tereshko; H Ikeda; V E Marquez; M Egli
Journal:  Nucleic Acids Res       Date:  1998-05-15       Impact factor: 16.971

8.  Comparison of X-ray and NMR structures for the Antennapedia homeodomain-DNA complex.

Authors:  E Fraenkel; C O Pabo
Journal:  Nat Struct Biol       Date:  1998-08

9.  5-amino-2'-deoxyuridine, a novel thymidine analogue for high-resolution footprinting of protein-DNA complexes.

Authors:  Michael J Storek; Alexandru Suciu; Gregory L Verdine
Journal:  Org Lett       Date:  2002-10-31       Impact factor: 6.005

10.  Synthesis and properties of phosphorylated 3'-O-beta-D-ribofuranosyl-2'-deoxythymidine.

Authors:  Ekaterina V Efimtseva; Alexandra A Shelkunova; Sergey N Mikhailov; Koen Nauwelaerts; Jef Rozenski; Eveline Lescrinier; Piet Herdewijn
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2003-04       Impact factor: 1.381
  10 in total

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