Literature DB >> 1384741

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids.

H M Berman1, W K Olson, D L Beveridge, J Westbrook, A Gelbin, T Demeny, S H Hsieh, A R Srinivasan, B Schneider.   

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Year:  1992        PMID： 1384741      PMCID： PMC1262208          DOI： 10.1016/S0006-3495(92)81649-1

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  12 in total

1.  The kinemage: a tool for scientific communication.

Authors:  D C Richardson; J S Richardson
Journal:  Protein Sci       Date:  1992-01       Impact factor: 6.725

2.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

3.  Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows.

Authors:  G Ravishanker; S Swaminathan; D L Beveridge; R Lavery; H Sklenar
Journal:  J Biomol Struct Dyn       Date:  1989-02

Review 4.  The effect of the base sequence on the fine structure of the DNA double helix.

Authors:  Z Shakked; D Rabinovich
Journal:  Prog Biophys Mol Biol       Date:  1986       Impact factor: 3.667

5.  The GenBank genetic sequence databank.

Authors:  H S Bilofsky; C Burks; J W Fickett; W B Goad; F I Lewitter; W P Rindone; C D Swindell; C S Tung
Journal:  Nucleic Acids Res       Date:  1986-01-10       Impact factor: 16.971

6.  Crystallographic refinement of yeast aspartic acid transfer RNA.

Authors:  E Westhof; P Dumas; D Moras
Journal:  J Mol Biol       Date:  1985-07-05       Impact factor: 5.469

7.  A comprehensive set of sequence analysis programs for the VAX.

Authors:  J Devereux; P Haeberli; O Smithies
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

8.  The anatomy of A-, B-, and Z-DNA.

Authors:  R E Dickerson; H R Drew; B N Conner; R M Wing; A V Fratini; M L Kopka
Journal:  Science       Date:  1982-04-30       Impact factor: 47.728

9.  The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals.

Authors:  K Grzeskowiak; K Yanagi; G G Privé; R E Dickerson
Journal:  J Biol Chem       Date:  1991-05-15       Impact factor: 5.157

10.  Yeast tRNAPhe conformation wheels: a novel probe of the monoclinic and orthorhombic models.

Authors:  A R Srinivasan; W K Olson
Journal:  Nucleic Acids Res       Date:  1980-05-24       Impact factor: 16.971
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  292 in total

1.  The IMB Jena Image Library of biological macromolecules.

Authors:  J Reichert; A Jabs; P Slickers; J Sühnel
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The PDB data uniformity project.

Authors:  T N Bhat; P Bourne; Z Feng; G Gilliland; S Jain; V Ravichandran; B Schneider; K Schneider; N Thanki; H Weissig; J Westbrook; H M Berman
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

4.  Molecular dynamics simulations of the d(CCAACGTTGG)(2) decamer: influence of the crystal environment.

Authors:  D R Bevan; L Li; L G Pedersen; T A Darden
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

5.  Crystal structure of a DNA.RNA hybrid duplex with a polypurine RNA r(gaagaagag) and a complementary polypyrimidine DNA d(CTCTTCTTC).

Authors:  Y Xiong; M Sundaralingam
Journal:  Nucleic Acids Res       Date:  2000-05-15       Impact factor: 16.971

6.  Intermolecular interactions and water structure in a condensed phase B-DNA crystal.

Authors:  G R Clark; C J Squire; L J Baker; R F Martin; J White
Journal:  Nucleic Acids Res       Date:  2000-03-01       Impact factor: 16.971

7.  Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple.

Authors:  J Deng; Y Xiong; C Sudarsanakumar; K Shi; M Sundaralingam
Journal:  RNA       Date:  2001-10       Impact factor: 4.942

8.  Sequence-dependent B<-->A transition in DNA evaluated with dimeric and trimeric scales.

Authors:  M Y Tolstorukov; V I Ivanov; G G Malenkov; R L Jernigan; V B Zhurkin
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

9.  Standard atomic volumes in double-stranded DNA and packing in protein--DNA interfaces.

Authors:  K Nadassy; I Tomás-Oliveira; I Alberts; J Janin; S J Wodak
Journal:  Nucleic Acids Res       Date:  2001-08-15       Impact factor: 16.971

10.  Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level.

Authors:  N M Luscombe; R A Laskowski; J M Thornton
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971
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