Literature DB >> 16511191

Cloning, purification, crystallization and preliminary X-ray crystallographic analysis of XC847, a 3'-5' oligoribonuclease from Xanthomonas campestris.

Yan-You Wu1, Ko-Hsin Chin, Chia-Cheng Chou, Cheng-Chung Lee, Hui-Lin Shr, Fei Philip Gao, Ping-Chiang Lyu, Andrew H-J Wang, Shan-Ho Chou.   

Abstract

Oligoribonucleases are essential components of RNA and DNA metabolism and close homologues of genes encoding them are found not only in prokaryotes but also in a wide range of eukaryotes, including yeast and humans. Inactivation of the oligoribonuclease gene (orn) can result in cellular lethality. Despite their important biological function, they have been studied little from a structural point of view. In this report, the cloning, expression, crystallization and preliminary X-ray analysis of XC847, a DEDDh-type 3'-5' oligoribonuclease from the plant pathogen Xanthomonas campestris pv. campestris, a Gram-negative bacterium causing major worldwide disease of cruciferous crops, is described. The XC847 crystals diffracted to a resolution of at least 2.1 A. They are tetragonal and belong to space group P4(3)2(1)2, with unit-cell parameters a = b = 67.5, c = 89.8 A. One molecule is present per asymmetric unit.

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Year:  2005        PMID: 16511191      PMCID: PMC1991326          DOI: 10.1107/S1744309105027132

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

Review 1.  DNA polymerases: structural diversity and common mechanisms.

Authors:  T A Steitz
Journal:  J Biol Chem       Date:  1999-06-18       Impact factor: 5.157

2.  The Pfam protein families database.

Authors:  A Bateman; E Birney; R Durbin; S R Eddy; K L Howe; E L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 3.  Exoribonuclease superfamilies: structural analysis and phylogenetic distribution.

Authors:  Y Zuo; M P Deutscher
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

4.  Structure of Escherichia coli exonuclease I suggests how processivity is achieved.

Authors:  W A Breyer; B W Matthews
Journal:  Nat Struct Biol       Date:  2000-12

Review 5.  MRNA stability and the control of gene expression: implications for human disease.

Authors:  Elysia M Hollams; Keith M Giles; Andrew M Thomson; Peter J Leedman
Journal:  Neurochem Res       Date:  2002-10       Impact factor: 3.996

6.  Oligoribonuclease is an essential component of the mRNA decay pathway.

Authors:  S Ghosh; M P Deutscher
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

7.  Structural basis for proofreading during replication of the Escherichia coli chromosome.

Authors:  Samir Hamdan; Paul D Carr; Susan E Brown; David L Ollis; Nicholas E Dixon
Journal:  Structure       Date:  2002-04       Impact factor: 5.006

8.  High-throughput screening of soluble recombinant proteins.

Authors:  Yan-Ping Shih; Wen-Mei Kung; Jui-Chuan Chen; Chia-Hui Yeh; Andrew H-J Wang; Ting-Fang Wang
Journal:  Protein Sci       Date:  2002-07       Impact factor: 6.725

9.  X-ray structure and activity of the yeast Pop2 protein: a nuclease subunit of the mRNA deadenylase complex.

Authors:  Stéphane Thore; Fabienne Mauxion; Bertrand Séraphin; Dietrich Suck
Journal:  EMBO Rep       Date:  2003-11-14       Impact factor: 8.807

10.  Purification and crystallization of Escherichia coli oligoribonuclease.

Authors:  Tristan J Fiedler; Helen A Vincent; Yuhong Zuo; Orit Gavrialov; Arun Malhotra
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-03-23
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  15 in total

1.  The cloning, crystallization and preliminary X-ray analysis of XC2113, a YaeQ protein from Xanthomonas campestris.

Authors:  Kuo-Cheng Chio; Ko-Hsin Chin; Fei Philip Gao; Ping-Chiang Lyu; Hui-Lin Shr; Andrew H-J Wang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-09-30

2.  Cloning, crystallization and preliminary X-ray study of XC1258, a CN-hydrolase superfamily protein from Xanthomonas campestris.

Authors:  Ying-Der Tsai; Ko-Hsin Chin; Hui-Lin Shr; Fei Philip Gao; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-09-30

3.  Cloning, crystallization and preliminary X-ray studies of XC2981 from Xanthomonas campestris, a putative CutA1 protein involved in copper-ion homeostasis.

Authors:  Chien-Hung Lin; Ko-Hsin Chin; Fei Philip Gao; Ping-Chiang Lyu; Hui-Lin Shr; Andrew H-J Wang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-10-20

4.  The crystallization of apo-form UMP kinase from Xanthomonas campestris is significantly improved in a strong magnetic field.

Authors:  Jhe-Le Tu; Ko-Hsin Chin; Andrew H-J Wang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-04-20

5.  Crystallization and preliminary X-ray diffraction characterization of the XccFimX(EAL)-c-di-GMP and XccFimX(EAL)-c-di-GMP-XccPilZ complexes from Xanthomonas campestris.

Authors:  Yi-Ting Liao; Ko-Hsin Chin; Wei-Ting Kuo; Mary Lay-Cheng Chuah; Zhao-Xun Liang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-02-22

6.  Crystallization and preliminary X-ray diffraction studies of Xanthomonas campestris PNPase in the presence of c-di-GMP.

Authors:  Yu-Chuan Wang; Ko-Hsin Chin; Mary Lay-Cheng Chuah; Zhao-Xun Liang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-09-29

7.  Crystallization and preliminary X-ray analysis of XC1015, a histidine triad-like protein from Xanthomonas campestris.

Authors:  Wen-Ting Lo; Ko-Hsin Chin; Hui-Lin Shr; Fei Philip Gao; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-30

8.  Preliminary X-ray analysis of XC5848, a hypothetical ORFan protein with an Sm-like motif from Xanthomonas campestris.

Authors:  Sz-Kai Ruan; Ko-Hsin Chin; Hui-Lin Shr; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-12-16

9.  Crystallization and preliminary X-ray diffraction characterization of RpfF, a key DSF synthase from Stenotrophomonas maltophilia.

Authors:  Xian Ya Lin; Shu Ju Liao; Ko Hsin Chin; Hui Ling Shih; Gwan Han Shen; Andrew H J Wang; Shan Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-09-23

10.  Crystallization and preliminary X-ray diffraction characterization of an essential protein from Xanthomonas campestris that contains a noncanonical PilZ signature motif yet is critical for pathogenicity.

Authors:  Tso Ning Li; Ko Hsin Chin; Hui Ling Shih; Andrew H J Wang; Shan Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-09-25
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