Literature DB >> 16511126

Expression, purification, crystallization and preliminary X-ray crystallographic studies of a novel acetylcitrulline deacetylase from Xanthomonas campestris.

Dashuang Shi1, Xiaolin Yu, Lauren Roth, Hiroki Morizono, Yetrib Hathout, Norma M Allewell, Mendel Tuchman.   

Abstract

A novel N-acetyl-L-citrulline deacetylase that is able to catalyze the hydrolysis of N-acetyl-L-citrulline to acetate and citrulline was identified from Xanthomonas campestris. The protein was overexpressed, purified and crystallized. The crystals belong to the monoclinic space group C2 and diffract to 1.75 A resolution, with unit-cell parameters a = 94.13, b = 95.23, c = 43.61 A, beta = 93.76 degrees. Since attempts to use homologous structural models to solve the structure via molecular replacement were unsuccessful, the selenomethionine-substituted protein was prepared using an overnight auto-induction overexpression system. Selenomethionine incorporation into the protein was verified by MALDI-TOF/TOF mass-spectroscopic analysis after trypsin digestion. The crystals of the selenomethionine-substituted protein were prepared using crystallization conditions similar to those for the native protein. Multiple anomalous dispersion (MAD) data were collected at Brookhaven National Laboratory. Structure determination is under way using the MAD phasing method.

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Year:  2005        PMID: 16511126      PMCID: PMC1952451          DOI: 10.1107/S1744309105018051

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  15 in total

1.  Implementation of molecular replacement in AMoRe.

Authors:  J Navaza
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-09-21

2.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

3.  Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas campestris: a novel enzyme in a new arginine biosynthetic pathway found in several eubacteria.

Authors:  Dashuang Shi; Hiroki Morizono; Xiaolin Yu; Lauren Roth; Ljubica Caldovic; Norma M Allewell; Michael H Malamy; Mendel Tuchman
Journal:  J Biol Chem       Date:  2005-02-24       Impact factor: 5.157

4.  Human ornithine transcarbamylase: crystallographic insights into substrate recognition and conformational changes.

Authors:  D Shi; H Morizono; X Yu; L Tong; N M Allewell; M Tuchman
Journal:  Biochem J       Date:  2001-03-15       Impact factor: 3.857

Review 5.  Methods of detection of Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis and Tannerella forsythensis in periodontal microbiology, with special emphasis on advanced molecular techniques: a review.

Authors:  Mariano Sanz; Laura Lau; David Herrera; Juan Manuel Morillo; Augusto Silva
Journal:  J Clin Periodontol       Date:  2004-12       Impact factor: 8.728

6.  Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.

Authors:  A C R da Silva; J A Ferro; F C Reinach; C S Farah; L R Furlan; R B Quaggio; C B Monteiro-Vitorello; M A Van Sluys; N F Almeida; L M C Alves; A M do Amaral; M C Bertolini; L E A Camargo; G Camarotte; F Cannavan; J Cardozo; F Chambergo; L P Ciapina; R M B Cicarelli; L L Coutinho; J R Cursino-Santos; H El-Dorry; J B Faria; A J S Ferreira; R C C Ferreira; M I T Ferro; E F Formighieri; M C Franco; C C Greggio; A Gruber; A M Katsuyama; L T Kishi; R P Leite; E G M Lemos; M V F Lemos; E C Locali; M A Machado; A M B N Madeira; N M Martinez-Rossi; E C Martins; J Meidanis; C F M Menck; C Y Miyaki; D H Moon; L M Moreira; M T M Novo; V K Okura; M C Oliveira; V R Oliveira; H A Pereira; A Rossi; J A D Sena; C Silva; R F de Souza; L A F Spinola; M A Takita; R E Tamura; E C Teixeira; R I D Tezza; M Trindade dos Santos; D Truffi; S M Tsai; F F White; J C Setubal; J P Kitajima
Journal:  Nature       Date:  2002-05-23       Impact factor: 49.962

7.  Fastidian gum: the Xylella fastidiosa exopolysaccharide possibly involved in bacterial pathogenicity.

Authors:  F R da Silva; A L Vettore; E L Kemper; A Leite; P Arruda
Journal:  FEMS Microbiol Lett       Date:  2001-09-25       Impact factor: 2.742

8.  Simultaneous detection of Bacteroides fragilis group species by leuB-directed PCR.

Authors:  Tsuyoshi Miki; Tomomi Kuwahara; Haruyuki Nakayama; Natsumi Okada; Keiko Kataoka; Hideki Arimochi; Yoshinari Ohnishi
Journal:  J Med Invest       Date:  2005-02

9.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

10.  Maximum-likelihood density modification.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08
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  9 in total

1.  Expression, crystallization and preliminary crystallographic studies of a novel bifunctional N-acetylglutamate synthase/kinase from Xanthomonas campestris homologous to vertebrate N-acetylglutamate synthase.

Authors:  Dashuang Shi; Ljubica Caldovic; Zhongmin Jin; Xiaolin Yu; Qiuhao Qu; Lauren Roth; Hiroki Morizono; Yetrib Hathout; Norma M Allewell; Mendel Tuchman
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-30

2.  The ygeW encoded protein from Escherichia coli is a knotted ancestral catabolic transcarbamylase.

Authors:  Yongdong Li; Zhongmin Jin; Xiaolin Yu; Norma M Allewell; Mendel Tuchman; Dashuang Shi
Journal:  Proteins       Date:  2011-05-09

3.  Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.

Authors:  Yongdong Li; Xiaolin Yu; Jeremy Ho; David Fushman; Norma M Allewell; Mendel Tuchman; Dashuang Shi
Journal:  Biochemistry       Date:  2010-08-17       Impact factor: 3.162

4.  Replacement of the arginine biosynthesis operon in Xanthomonadales by lateral gene transfer.

Authors:  Wanessa C Lima; Carlos F M Menck
Journal:  J Mol Evol       Date:  2008-02-28       Impact factor: 2.395

5.  The crystal structure of N-acetyl-L-glutamate synthase from Neisseria gonorrhoeae provides insights into mechanisms of catalysis and regulation.

Authors:  Dashuang Shi; Vatsala Sagar; Zhongmin Jin; Xiaolin Yu; Ljubica Caldovic; Hiroki Morizono; Norma M Allewell; Mendel Tuchman
Journal:  J Biol Chem       Date:  2008-01-09       Impact factor: 5.157

6.  A single mutation in the active site swaps the substrate specificity of N-acetyl-L-ornithine transcarbamylase and N-succinyl-L-ornithine transcarbamylase.

Authors:  Dashuang Shi; Xiaolin Yu; Juan Cabrera-Luque; Tony Y Chen; Lauren Roth; Hiroki Morizono; Norma M Allewell; Mendel Tuchman
Journal:  Protein Sci       Date:  2007-06-28       Impact factor: 6.725

Review 7.  Surprising arginine biosynthesis: a reappraisal of the enzymology and evolution of the pathway in microorganisms.

Authors:  Ying Xu; Bernard Labedan; Nicolas Glansdorff
Journal:  Microbiol Mol Biol Rev       Date:  2007-03       Impact factor: 11.056

8.  A novel N-acetylglutamate synthase architecture revealed by the crystal structure of the bifunctional enzyme from Maricaulis maris.

Authors:  Dashuang Shi; Yongdong Li; Juan Cabrera-Luque; Zhongmin Jin; Xiaolin Yu; Gengxiang Zhao; Nantaporn Haskins; Norma M Allewell; Mendel Tuchman
Journal:  PLoS One       Date:  2011-12-12       Impact factor: 3.240

9.  Inversion of allosteric effect of arginine on N-acetylglutamate synthase, a molecular marker for evolution of tetrapods.

Authors:  Nantaporn Haskins; Maria Panglao; Qiuhao Qu; Himani Majumdar; Juan Cabrera-Luque; Hiroki Morizono; Mendel Tuchman; Ljubica Caldovic
Journal:  BMC Biochem       Date:  2008-09-18       Impact factor: 4.059

  9 in total

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