Literature DB >> 20695527

Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.

Yongdong Li1, Xiaolin Yu, Jeremy Ho, David Fushman, Norma M Allewell, Mendel Tuchman, Dashuang Shi.   

Abstract

N-Acetyl-l-ornithine transcarbamylase (AOTCase), rather than ornithine transcarbamylase (OTCase), is the essential carbamylase enzyme in the arginine biosynthesis of several plant and human pathogens. The specificity of this unique enzyme provides a potential target for controlling the spread of these pathogens. Recently, several crystal structures of AOTCase from Xanthomonas campestris (xc) have been determined. In these structures, an unexplained electron density at the tip of the Lys302 side chain was observed. Using (13)C NMR spectroscopy, we show herein that Lys302 is post-translationally carboxylated. The structure of wild-type AOTCase in a complex with the bisubstrate analogue N(delta)-(phosphonoacetyl)-N(alpha)-acetyl-l-ornithine (PALAO) indicates that the carboxyl group on Lys302 forms a strong hydrogen bonding network with surrounding active site residues, Lys252, Ser253, His293, and Glu92 from the adjacent subunit either directly or via a water molecule. Furthermore, the carboxyl group is involved in binding N-acetyl-l-ornithine via a water molecule. Activity assays with the wild-type enzyme and several mutants demonstrate that the post-translational modification of lysine 302 has an important role in catalysis.

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Year:  2010        PMID: 20695527      PMCID: PMC2959125          DOI: 10.1021/bi1007386

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  63 in total

1.  Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas campestris: a novel enzyme in a new arginine biosynthetic pathway found in several eubacteria.

Authors:  Dashuang Shi; Hiroki Morizono; Xiaolin Yu; Lauren Roth; Ljubica Caldovic; Norma M Allewell; Michael H Malamy; Mendel Tuchman
Journal:  J Biol Chem       Date:  2005-02-24       Impact factor: 5.157

2.  Molecular basis for the autoregulation of the protein acetyl transferase Rtt109.

Authors:  Pete Stavropoulos; Vivien Nagy; Günter Blobel; André Hoelz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-21       Impact factor: 11.205

3.  Structure of a product complex of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase.

Authors:  T C Taylor; I Andersson
Journal:  Biochemistry       Date:  1997-04-01       Impact factor: 3.162

4.  Determination of the MurD mechanism through crystallographic analysis of enzyme complexes.

Authors:  J A Bertrand; G Auger; L Martin; E Fanchon; D Blanot; D Le Beller; J van Heijenoort; O Dideberg
Journal:  J Mol Biol       Date:  1999-06-11       Impact factor: 5.469

5.  Insights into class D beta-lactamases are revealed by the crystal structure of the OXA10 enzyme from Pseudomonas aeruginosa.

Authors:  L Maveyraud; D Golemi; L P Kotra; S Tranier; S Vakulenko; S Mobashery; J P Samama
Journal:  Structure       Date:  2000-12-15       Impact factor: 5.006

6.  Structures of N-acetylornithine transcarbamoylase from Xanthomonas campestris complexed with substrates and substrate analogs imply mechanisms for substrate binding and catalysis.

Authors:  Dashuang Shi; Xiaolin Yu; Lauren Roth; Hiroki Morizono; Mendel Tuchman; Norma M Allewell
Journal:  Proteins       Date:  2006-08-01

7.  Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.

Authors:  A C R da Silva; J A Ferro; F C Reinach; C S Farah; L R Furlan; R B Quaggio; C B Monteiro-Vitorello; M A Van Sluys; N F Almeida; L M C Alves; A M do Amaral; M C Bertolini; L E A Camargo; G Camarotte; F Cannavan; J Cardozo; F Chambergo; L P Ciapina; R M B Cicarelli; L L Coutinho; J R Cursino-Santos; H El-Dorry; J B Faria; A J S Ferreira; R C C Ferreira; M I T Ferro; E F Formighieri; M C Franco; C C Greggio; A Gruber; A M Katsuyama; L T Kishi; R P Leite; E G M Lemos; M V F Lemos; E C Locali; M A Machado; A M B N Madeira; N M Martinez-Rossi; E C Martins; J Meidanis; C F M Menck; C Y Miyaki; D H Moon; L M Moreira; M T M Novo; V K Okura; M C Oliveira; V R Oliveira; H A Pereira; A Rossi; J A D Sena; C Silva; R F de Souza; L A F Spinola; M A Takita; R E Tamura; E C Teixeira; R I D Tezza; M Trindade dos Santos; D Truffi; S M Tsai; F F White; J C Setubal; J P Kitajima
Journal:  Nature       Date:  2002-05-23       Impact factor: 49.962

Review 8.  Carbamoylation of amino acids and proteins in uremia.

Authors:  L M Kraus; A P Kraus
Journal:  Kidney Int Suppl       Date:  2001-02       Impact factor: 10.545

9.  Expression, purification, crystallization and preliminary X-ray crystallographic studies of a novel acetylcitrulline deacetylase from Xanthomonas campestris.

Authors:  Dashuang Shi; Xiaolin Yu; Lauren Roth; Hiroki Morizono; Yetrib Hathout; Norma M Allewell; Mendel Tuchman
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-15

10.  The crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family.

Authors:  Julia D Burman; Clare E M Stevenson; R Gary Sawers; David M Lawson
Journal:  BMC Struct Biol       Date:  2007-05-16
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  5 in total

1.  Lysine carboxylation: unveiling a spontaneous post-translational modification.

Authors:  David Jimenez-Morales; Larisa Adamian; Dashuang Shi; Jie Liang
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-12-24

Review 2.  Class D β-lactamases: a reappraisal after five decades.

Authors:  David A Leonard; Robert A Bonomo; Rachel A Powers
Journal:  Acc Chem Res       Date:  2013-07-31       Impact factor: 22.384

3.  Chemoproteomic identification of CO2-dependent lysine carboxylation in proteins.

Authors:  Dustin T King; Sha Zhu; Darryl B Hardie; Jesús E Serrano-Negrón; Zarina Madden; Subramania Kolappan; David J Vocadlo
Journal:  Nat Chem Biol       Date:  2022-06-16       Impact factor: 16.174

4.  Structure of the complex of Neisseria gonorrhoeae N-acetyl-L-glutamate synthase with a bound bisubstrate analog.

Authors:  Gengxiang Zhao; Norma M Allewell; Mendel Tuchman; Dashuang Shi
Journal:  Biochem Biophys Res Commun       Date:  2012-12-20       Impact factor: 3.575

Review 5.  From Genome to Structure and Back Again: A Family Portrait of the Transcarbamylases.

Authors:  Dashuang Shi; Norma M Allewell; Mendel Tuchman
Journal:  Int J Mol Sci       Date:  2015-08-12       Impact factor: 5.923

  5 in total

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