Literature DB >> 21557323

The ygeW encoded protein from Escherichia coli is a knotted ancestral catabolic transcarbamylase.

Yongdong Li1, Zhongmin Jin, Xiaolin Yu, Norma M Allewell, Mendel Tuchman, Dashuang Shi.   

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Year:  2011        PMID： 21557323      PMCID： PMC3115391          DOI： 10.1002/prot.23043

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


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  54 in total

1.  A deeply knotted protein structure and how it might fold.

Authors:  W R Taylor
Journal:  Nature       Date:  2000-08-24       Impact factor: 49.962

2.  Regulation of the Escherichia coli allantoin regulon: coordinated function of the repressor AllR and the activator AllS.

Authors:  Maria R Rintoul; Eva Cusa; Laura Baldomà; Josefa Badia; Larry Reitzer; Juan Aguilar
Journal:  J Mol Biol       Date:  2002-12-06       Impact factor: 5.469

3.  Breaking good resolutions with ARP/wARP.

Authors:  Richard J Morris; Petrus H Zwart; Serge Cohen; Francisco J Fernandez; Mattheos Kakaris; Olga Kirillova; Clemens Vonrhein; Anastassis Perrakis; Victor S Lamzin
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

4.  Isolation of a chromosomal region of Klebsiella pneumoniae associated with allantoin metabolism and liver infection.

Authors:  Huei-Chi Chou; Cha-Ze Lee; Li-Chen Ma; Chi-Tai Fang; Shan-Chwen Chang; Jin-Town Wang
Journal:  Infect Immun       Date:  2004-07       Impact factor: 3.441

5.  Kinetic studies of allosteric catabolic ornithine carbamoyltransferase from Pseudomonas aeruginosa.

Authors:  G Sainz; C Tricot; M F Foray; D Marion; O Dideberg; V Stalon
Journal:  Eur J Biochem       Date:  1998-01-15

6.  Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.

Authors:  E Cusa; N Obradors; L Baldomà; J Badía; J Aguilar
Journal:  J Bacteriol       Date:  1999-12       Impact factor: 3.490

7.  Expression, purification, crystallization and preliminary X-ray crystallographic studies of a novel acetylcitrulline deacetylase from Xanthomonas campestris.

Authors:  Dashuang Shi; Xiaolin Yu; Lauren Roth; Hiroki Morizono; Yetrib Hathout; Norma M Allewell; Mendel Tuchman
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-15

8.  Crystal structure of the catalytic trimer of Methanococcus jannaschii aspartate transcarbamoylase.

Authors:  Jacqueline Vitali; Michael J Colaneri; Evan Kantrowitz
Journal:  Proteins       Date:  2008-05-15

9.  Intricate knots in proteins: Function and evolution.

Authors:  Peter Virnau; Leonid A Mirny; Mehran Kardar
Journal:  PLoS Comput Biol       Date:  2006-07-28       Impact factor: 4.475

10.  ORENZA: a web resource for studying ORphan ENZyme activities.

Authors:  Olivier Lespinet; Bernard Labedan
Journal:  BMC Bioinformatics       Date:  2006-10-06       Impact factor: 3.169
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  7 in total

1.  Crystal structure and biochemical properties of putrescine carbamoyltransferase from Enterococcus faecalis: Assembly, active site, and allosteric regulation.

Authors:  Dashuang Shi; Xiaolin Yu; Gengxiang Zhao; Jeremy Ho; Shennon Lu; Norma M Allewell; Mendel Tuchman
Journal:  Proteins       Date:  2012-02-13

2.  The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes.

Authors:  Adam Alexander Thil Smith; Eugeni Belda; Alain Viari; Claudine Medigue; David Vallenet
Journal:  PLoS Comput Biol       Date:  2012-05-31       Impact factor: 4.475

Review 3.  The N-Acetylglutamate Synthase Family: Structures, Function and Mechanisms.

Authors:  Dashuang Shi; Norma M Allewell; Mendel Tuchman
Journal:  Int J Mol Sci       Date:  2015-06-09       Impact factor: 5.923

Review 4.  From Genome to Structure and Back Again: A Family Portrait of the Transcarbamylases.

Authors:  Dashuang Shi; Norma M Allewell; Mendel Tuchman
Journal:  Int J Mol Sci       Date:  2015-08-12       Impact factor: 5.923

Review 5.  Coping with inevitable accidents in metabolism.

Authors:  Antoine Danchin
Journal:  Microb Biotechnol       Date:  2016-12-29       Impact factor: 5.813

6.  Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism.

Authors:  Matthieu Barba; Raphaël Dutoit; Christianne Legrain; Bernard Labedan
Journal:  BMC Syst Biol       Date:  2013-10-05

Review 7.  Sources and Fates of Carbamyl Phosphate: A Labile Energy-Rich Molecule with Multiple Facets.

Authors:  Dashuang Shi; Ljubica Caldovic; Mendel Tuchman
Journal:  Biology (Basel)       Date:  2018-06-12
  7 in total

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