Literature DB >> 16503630

Protein stability and surface electrostatics: a charged relationship.

Samantha S Strickler1, Alexey V Gribenko, Alexander V Gribenko, Timothy R Keiffer, Jessica Tomlinson, Tracey Reihle, Vakhtang V Loladze, George I Makhatadze.   

Abstract

Engineering proteins to withstand a broad range of conditions continues to be a coveted objective, holding the potential to advance biomedicine, industry, and our understanding of disease. One way of achieving this goal lies in elucidating the underlying interactions that define protein stability. It has been shown that the hydrophobic effect, hydrogen bonding, and packing interactions between residues in the protein interior are dominant factors that define protein stability. The role of surface residues in protein stability has received much less attention. It has been believed that surface residues are not important for protein stability particularly because their interactions with the solvent should be similar in the native and unfolded states. In the case of surface charged residues, it was sometimes argued that solvent exposure meant that the high dielectric of the solvent will further decrease the strength of the charge-charge interactions. In this paper, we challenge the notion that the surface charged residues are not important for protein stability. We computationally redesigned sequences of five different proteins to optimize the surface charge-charge interactions. All redesigned proteins exhibited a significant increase in stability relative to their parent proteins, as experimentally determined by circular dichroism spectroscopy and differential scanning calorimetry. These results suggest that surface charge-charge interactions are important for protein stability and that rational optimization of charge-charge interactions on the protein surface can be a viable strategy for enhancing protein stability.

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Year:  2006        PMID: 16503630     DOI: 10.1021/bi0600143

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  87 in total

1.  Kinetic and structural characterization of thermostabilized mutants of human carbonic anhydrase II.

Authors:  Zoë Fisher; Christopher D Boone; Shya Masri Biswas; Balasubramanian Venkatakrishnan; Mayank Aggarwal; Chingkuang Tu; Mavis Agbandje-McKenna; David Silverman; Robert McKenna
Journal:  Protein Eng Des Sel       Date:  2012-06-12       Impact factor: 1.650

2.  Increasing protein stability: importance of DeltaC(p) and the denatured state.

Authors:  Hailong Fu; Gerald Grimsley; J Martin Scholtz; C Nick Pace
Journal:  Protein Sci       Date:  2010-05       Impact factor: 6.725

3.  Boosting protein stability with the computational design of β-sheet surfaces.

Authors:  Doo Nam Kim; Timothy M Jacobs; Brian Kuhlman
Journal:  Protein Sci       Date:  2016-01-13       Impact factor: 6.725

4.  Computational design of the Fyn SH3 domain with increased stability through optimization of surface charge charge interactions.

Authors:  Katrina L Schweiker; Arash Zarrine-Afsar; Alan R Davidson; George I Makhatadze
Journal:  Protein Sci       Date:  2007-12       Impact factor: 6.725

5.  Electrostatic interactions in the denatured state ensemble: their effect upon protein folding and protein stability.

Authors:  Jae-Hyun Cho; Satoshi Sato; Jia-Cherng Horng; Burcu Anil; Daniel P Raleigh
Journal:  Arch Biochem Biophys       Date:  2007-08-22       Impact factor: 4.013

6.  Supercharging proteins can impart unusual resilience.

Authors:  Michael S Lawrence; Kevin J Phillips; David R Liu
Journal:  J Am Chem Soc       Date:  2007-08-01       Impact factor: 15.419

7.  Rational stabilization of enzymes by computational redesign of surface charge-charge interactions.

Authors:  Alexey V Gribenko; Mayank M Patel; Jiajing Liu; Scott A McCallum; Chunyu Wang; George I Makhatadze
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-05       Impact factor: 11.205

Review 8.  Protein ionizable groups: pK values and their contribution to protein stability and solubility.

Authors:  C Nick Pace; Gerald R Grimsley; J Martin Scholtz
Journal:  J Biol Chem       Date:  2009-01-21       Impact factor: 5.157

9.  A method to rationally increase protein stability based on the charge-charge interaction, with application to lipase LipK107.

Authors:  Lujia Zhang; Xiaomang Tang; Dongbing Cui; Zhiqiang Yao; Bei Gao; Shuiqin Jiang; Bo Yin; Y Adam Yuan; Dongzhi Wei
Journal:  Protein Sci       Date:  2013-11-22       Impact factor: 6.725

10.  Rational modification of protein stability by targeting surface sites leads to complicated results.

Authors:  Shifeng Xiao; Vadim Patsalo; Bing Shan; Yuan Bi; David F Green; Daniel P Raleigh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

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