Literature DB >> 16487484

Quantum mechanical hydrogen tunneling in bacterial copper amine oxidase reaction.

Takeshi Murakawa1, Toshihide Okajima, Shun'ichi Kuroda, Takuya Nakamoto, Masayasu Taki, Yukio Yamamoto, Hideyuki Hayashi, Katsuyuki Tanizawa.   

Abstract

A key step decisively affecting the catalytic efficiency of copper amine oxidase is stereospecific abstraction of substrate alpha-proton by a conserved Asp residue. We analyzed this step by pre-steady-state kinetics using a bacterial enzyme and stereospecifically deuterium-labeled substrates, 2-phenylethylamine and tyramine. A small and temperature-dependent kinetic isotope effect (KIE) was observed with 2-phenylethylamine, whereas a large and temperature-independent KIE was observed with tyramine in the alpha-proton abstraction step, showing that this step is driven by quantum mechanical hydrogen tunneling rather than the classical transition-state mechanism. Furthermore, an Arrhenius-type preexponential factor ratio approaching a transition-state value was obtained in the reaction of a mutant enzyme lacking the critical Asp. These results provide strong evidence for enzyme-enhanced hydrogen tunneling. X-ray crystallographic structures of the reaction intermediates revealed a small difference in the binding mode of distal parts of substrates, which would modulate hydrogen tunneling proceeding through either active or passive dynamics.

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Year:  2006        PMID: 16487484     DOI: 10.1016/j.bbrc.2006.01.150

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  10 in total

1.  Complexes of the copper-containing amine oxidase from Arthrobacter globiformis with the inhibitors benzylhydrazine and tranylcypromine.

Authors:  David B Langley; Daniel M Trambaiolo; Anthony P Duff; David M Dooley; Hans C Freeman; J Mitchell Guss
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-06-11

2.  In crystallo thermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase.

Authors:  Takeshi Murakawa; Seiki Baba; Yoshiaki Kawano; Hideyuki Hayashi; Takato Yano; Takashi Kumasaka; Masaki Yamamoto; Katsuyuki Tanizawa; Toshihide Okajima
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-18       Impact factor: 11.205

Review 3.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

Review 4.  Hydrogen tunneling in enzymes and biomimetic models.

Authors:  Joshua P Layfield; Sharon Hammes-Schiffer
Journal:  Chem Rev       Date:  2013-12-20       Impact factor: 60.622

Review 5.  Hydrogen tunneling links protein dynamics to enzyme catalysis.

Authors:  Judith P Klinman; Amnon Kohen
Journal:  Annu Rev Biochem       Date:  2013       Impact factor: 23.643

6.  Update 1 of: Tunneling and dynamics in enzymatic hydride transfer.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Chem Rev       Date:  2010-12-08       Impact factor: 60.622

7.  Inner-sphere mechanism for molecular oxygen reduction catalyzed by copper amine oxidases.

Authors:  Arnab Mukherjee; Valeriy V Smirnov; Michael P Lanci; Doreen E Brown; Eric M Shepard; David M Dooley; Justine P Roth
Journal:  J Am Chem Soc       Date:  2008-06-27       Impact factor: 15.419

8.  Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.

Authors:  Takeshi Murakawa; Akio Hamaguchi; Shota Nakanishi; Misumi Kataoka; Tadashi Nakai; Yoshiaki Kawano; Hiroshi Yamaguchi; Hideyuki Hayashi; Katsuyuki Tanizawa; Toshihide Okajima
Journal:  J Biol Chem       Date:  2015-08-11       Impact factor: 5.157

9.  Neutron crystallography of copper amine oxidase reveals keto/enolate interconversion of the quinone cofactor and unusual proton sharing.

Authors:  Takeshi Murakawa; Kazuo Kurihara; Mitsuo Shoji; Chie Shibazaki; Tomoko Sunami; Taro Tamada; Naomine Yano; Taro Yamada; Katsuhiro Kusaka; Mamoru Suzuki; Yasuteru Shigeta; Ryota Kuroki; Hideyuki Hayashi; Takato Yano; Katsuyuki Tanizawa; Motoyasu Adachi; Toshihide Okajima
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-05       Impact factor: 11.205

10.  Unique protonation states of aspartate and topaquinone in the active site of copper amine oxidase.

Authors:  Mitsuo Shoji; Takeshi Murakawa; Mauro Boero; Yasuteru Shigeta; Hideyuki Hayashi; Toshihide Okajima
Journal:  RSC Adv       Date:  2020-10-21       Impact factor: 4.036

  10 in total

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