Literature DB >> 26269595

Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.

Takeshi Murakawa1, Akio Hamaguchi2, Shota Nakanishi2, Misumi Kataoka3, Tadashi Nakai2, Yoshiaki Kawano4, Hiroshi Yamaguchi3, Hideyuki Hayashi5, Katsuyuki Tanizawa6, Toshihide Okajima7.   

Abstract

The catalytic reaction of copper amine oxidase proceeds through a ping-pong mechanism comprising two half-reactions. In the initial half-reaction, the substrate amine reduces the Tyr-derived cofactor, topa quinone (TPQ), to an aminoresorcinol form (TPQamr) that is in equilibrium with a semiquinone radical (TPQsq) via an intramolecular electron transfer to the active-site copper. We have analyzed this reductive half-reaction in crystals of the copper amine oxidase from Arthrobacter globiformis. Anerobic soaking of the crystals with an amine substrate shifted the equilibrium toward TPQsq in an "on-copper" conformation, in which the 4-OH group ligated axially to the copper center, which was probably reduced to Cu(I). When the crystals were soaked with substrate in the presence of halide ions, which act as uncompetitive and noncompetitive inhibitors with respect to the amine substrate and dioxygen, respectively, the equilibrium in the crystals shifted toward the "off-copper" conformation of TPQamr. The halide ion was bound to the axial position of the copper center, thereby preventing TPQamr from adopting the on-copper conformation. Furthermore, transient kinetic analyses in the presence of viscogen (glycerol) revealed that only the rate constant in the step of TPQamr/TPQsq interconversion is markedly affected by the viscogen, which probably perturbs the conformational change. These findings unequivocally demonstrate that TPQ undergoes large conformational changes during the reductive half-reaction.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  catalytic intermediate; catalytic mechanism; conformational change; copper amine oxidase; electron transfer; oxidase; quinone; radical; topa quinone; x-ray crystallography

Mesh:

Substances:

Year:  2015        PMID: 26269595      PMCID: PMC4645623          DOI: 10.1074/jbc.M115.662726

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  54 in total

1.  An unexpected role for the active site base in cofactor orientation and flexibility in the copper amine oxidase from Hansenula polymorpha.

Authors:  J Plastino; E L Green; J Sanders-Loehr; J P Klinman
Journal:  Biochemistry       Date:  1999-06-29       Impact factor: 3.162

2.  Diffusion-limited component of reactions catalyzed by Bacillus cereus beta-lactamase I.

Authors:  L W Hardy; J F Kirsch
Journal:  Biochemistry       Date:  1984-03       Impact factor: 3.162

3.  The crystal structure of Pichia pastoris lysyl oxidase.

Authors:  Anthony P Duff; Aina E Cohen; Paul J Ellis; Jason A Kuchar; David B Langley; Eric M Shepard; David M Dooley; Hans C Freeman; J Mitchell Guss
Journal:  Biochemistry       Date:  2003-12-30       Impact factor: 3.162

4.  Visualization of dioxygen bound to copper during enzyme catalysis.

Authors:  C M Wilmot; J Hajdu; M J McPherson; P F Knowles; S E Phillips
Journal:  Science       Date:  1999-11-26       Impact factor: 47.728

5.  The active site base controls cofactor reactivity in Escherichia coli amine oxidase: x-ray crystallographic studies with mutational variants.

Authors:  J M Murray; C G Saysell; C M Wilmot; W S Tambyrajah; J Jaeger; P F Knowles; S E Phillips; M J McPherson
Journal:  Biochemistry       Date:  1999-06-29       Impact factor: 3.162

6.  The role of copper in topa quinone biogenesis and catalysis, as probed by azide inhibition of a copper amine oxidase from yeast.

Authors:  B Schwartz; A K Olgin; J P Klinman
Journal:  Biochemistry       Date:  2001-03-06       Impact factor: 3.162

7.  2-Bromoethylamine as a potent selective suicide inhibitor for semicarbazide-sensitive amine oxidase.

Authors:  P H Yu; B A Davis; Y Deng
Journal:  Biochem Pharmacol       Date:  2001-03-15       Impact factor: 5.858

8.  Determination of human serum semicarbazide-sensitive amine oxidase activity: a possible clinical marker of atherosclerosis.

Authors:  Z Mészáros; I Karádi; A Csányi; T Szombathy; L Romics; K Magyar
Journal:  Eur J Drug Metab Pharmacokinet       Date:  1999 Oct-Dec       Impact factor: 2.441

9.  Role of copper ion in bacterial copper amine oxidase: spectroscopic and crystallographic studies of metal-substituted enzymes.

Authors:  Sei'ichiro Kishishita; Toshihide Okajima; Misa Kim; Hiroshi Yamaguchi; Shun Hirota; Shinnichiro Suzuki; Shun'ichi Kuroda; Katsuyuki Tanizawa; Minae Mure
Journal:  J Am Chem Soc       Date:  2003-01-29       Impact factor: 15.419

10.  Cyanide as a copper and quinone-directed inhibitor of amine oxidases from pea seedlings ( Pisum sativum) and Arthrobacter globiformis: evidence for both copper coordination and cyanohydrin derivatization of the quinone cofactor.

Authors:  Eric M Shepard; Gregory A Juda; Ke-Qing Ling; Lawrence M Sayre; David M Dooley
Journal:  J Biol Inorg Chem       Date:  2004-02-19       Impact factor: 3.358

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  5 in total

1.  In crystallo thermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase.

Authors:  Takeshi Murakawa; Seiki Baba; Yoshiaki Kawano; Hideyuki Hayashi; Takato Yano; Takashi Kumasaka; Masaki Yamamoto; Katsuyuki Tanizawa; Toshihide Okajima
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-18       Impact factor: 11.205

2.  Current status of neutron crystallography in structural biology.

Authors:  Fumiaki Kono; Kazuo Kurihara; Taro Tamada
Journal:  Biophys Physicobiol       Date:  2022-04-01

3.  Neutron crystallography of copper amine oxidase reveals keto/enolate interconversion of the quinone cofactor and unusual proton sharing.

Authors:  Takeshi Murakawa; Kazuo Kurihara; Mitsuo Shoji; Chie Shibazaki; Tomoko Sunami; Taro Tamada; Naomine Yano; Taro Yamada; Katsuhiro Kusaka; Mamoru Suzuki; Yasuteru Shigeta; Ryota Kuroki; Hideyuki Hayashi; Takato Yano; Katsuyuki Tanizawa; Motoyasu Adachi; Toshihide Okajima
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-05       Impact factor: 11.205

4.  Mapping the interaction site and effect of the Siglec-9 inflammatory biomarker on human primary amine oxidase.

Authors:  Leonor Lopes de Carvalho; Heli Elovaara; Jerôme de Ruyck; Gerard Vergoten; Sirpa Jalkanen; Gabriela Guédez; Tiina A Salminen
Journal:  Sci Rep       Date:  2018-02-01       Impact factor: 4.379

Review 5.  Metalloprotein catalysis: structural and mechanistic insights into oxidoreductases from neutron protein crystallography.

Authors:  Gabriela C Schröder; Flora Meilleur
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-09-27       Impact factor: 7.652

  5 in total

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