Literature DB >> 16483243

A second generation mesoscopic lipid bilayer model: connections to field-theory descriptions of membranes and nonlocal hydrodynamics.

Gary S Ayton1, J Liam McWhirter, Gregory A Voth.   

Abstract

A new mesoscopic membrane model is developed in order to examine long-wavelength structural and dynamical membrane phenomena. Two different explicit mesoscopic solvent models are employed. The first mesoscopic solvent is denoted the big liquid oscillating blob system, which is parametrized to model water at a coarse-grained level and is motivated by a Langevin-like approach; the resulting membrane dynamics predict a solvent viscosity dependence consistent with the known viscosity of water. The second mesoscopic solvent is a Weeks-Chandler-Anderson model. Here, it is found that the correct mesoscopic hydrodynamic scaling of the membrane undulation dynamics is still preserved, although accelerated. When the behavior of the two membranes in close proximity to one another is examined, very little correlated motion is observed. However, the theoretically predicted scaling of the entropic undulation energy is confirmed, demonstrating that the entropic interaction between two membranes becomes increasingly repulsive with decreasing separation.

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Year:  2006        PMID: 16483243     DOI: 10.1063/1.2165194

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  20 in total

1.  Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation.

Authors:  Gary S Ayton; Philip D Blood; Gregory A Voth
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

2.  Protein-mediated transformation of lipid vesicles into tubular networks.

Authors:  Mijo Simunovic; Carsten Mim; Thomas C Marlovits; Guenter Resch; Vinzenz M Unger; Gregory A Voth
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

3.  Factors influencing local membrane curvature induction by N-BAR domains as revealed by molecular dynamics simulations.

Authors:  Philip D Blood; Richard D Swenson; Gregory A Voth
Journal:  Biophys J       Date:  2008-05-09       Impact factor: 4.033

4.  New insights into BAR domain-induced membrane remodeling.

Authors:  Gary S Ayton; Edward Lyman; Vinod Krishna; Richard D Swenson; Carsten Mim; Vinzenz M Unger; Gregory A Voth
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

5.  Mesoscale computational studies of membrane bilayer remodeling by curvature-inducing proteins.

Authors:  N Ramakrishnan; P B Sunil Kumar; Ravi Radhakrishnan
Journal:  Phys Rep       Date:  2014-10-01       Impact factor: 25.600

Review 6.  Multiscale simulations of protein-facilitated membrane remodeling.

Authors:  Aram Davtyan; Mijo Simunovic; Gregory A Voth
Journal:  J Struct Biol       Date:  2016-06-17       Impact factor: 2.867

7.  The mesoscopic membrane with proteins (MesM-P) model.

Authors:  Aram Davtyan; Mijo Simunovic; Gregory A Voth
Journal:  J Chem Phys       Date:  2017-07-28       Impact factor: 3.488

Review 8.  Systems biology of cellular membranes: a convergence with biophysics.

Authors:  Morgan Chabanon; Jeanne C Stachowiak; Padmini Rangamani
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2017-05-05

9.  Retinal conformation governs pKa of protonated Schiff base in rhodopsin activation.

Authors:  Shengshuang Zhu; Michael F Brown; Scott E Feller
Journal:  J Am Chem Soc       Date:  2013-06-11       Impact factor: 15.419

Review 10.  Multiscale simulation of protein mediated membrane remodeling.

Authors:  Gary S Ayton; Gregory A Voth
Journal:  Semin Cell Dev Biol       Date:  2009-11-13       Impact factor: 7.727

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