Literature DB >> 19922811

Multiscale simulation of protein mediated membrane remodeling.

Gary S Ayton1, Gregory A Voth.   

Abstract

Proteins interacting with membranes can result in substantial membrane deformations and curvatures. This effect is known in its broadest terms as membrane remodeling. This review article will survey current multiscale simulation methodologies that have been employed to examine protein mediated membrane remodeling. (c) 2009 Elsevier Ltd. All rights reserved.

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Year:  2009        PMID： 19922811      PMCID： PMC2855739          DOI： 10.1016/j.semcdb.2009.11.011

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN： 1084-9521            Impact factor:   7.727


  73 in total

1.  Nontopological saddle-splay and curvature instabilities from anisotropic membrane inclusions.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-06-03       Impact factor: 9.161

2.  Stable tubular microexovesicles of the erythrocyte membrane induced by dimeric amphiphiles.

Authors:  V Kralj-Iglic; A Iglic; H Hägerstrand; P Peterlin
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-04

Review 3.  Identifying conformational changes with site-directed spin labeling.

Authors:  W L Hubbell; D S Cafiso; C Altenbach
Journal:  Nat Struct Biol       Date:  2000-09

4.  BAR domains as sensors of membrane curvature: the amphiphysin BAR structure.

Authors:  Brian J Peter; Helen M Kent; Ian G Mills; Yvonne Vallis; P Jonathan G Butler; Philip R Evans; Harvey T McMahon
Journal:  Science       Date:  2003-11-26       Impact factor: 47.728

5.  Dynamics of pinned membranes with application to protein diffusion on the surface of red blood cells.

Authors:  Lawrence C-L Lin; Frank L H Brown
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

6.  Regulation of protein mobility via thermal membrane undulations.

Authors:  Frank L H Brown
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

7.  Bridging microscopic and mesoscopic simulations of lipid bilayers.

Authors:  Gary Ayton; Gregory A Voth
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

8.  Functional partnership between amphiphysin and dynamin in clathrin-mediated endocytosis.

Authors:  K Takei; V I Slepnev; V Haucke; P De Camilli
Journal:  Nat Cell Biol       Date:  1999-05       Impact factor: 28.824

9.  Solvent-free simulations of fluid membrane bilayers.

Authors:  Grace Brannigan; Frank L H Brown
Journal:  J Chem Phys       Date:  2004-01-08       Impact factor: 3.488

10.  Generation of high curvature membranes mediated by direct endophilin bilayer interactions.

Authors:  K Farsad; N Ringstad; K Takei; S R Floyd; K Rose; P De Camilli
Journal:  J Cell Biol       Date:  2001-10-15       Impact factor: 10.539
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  17 in total

1.  Relation between molecular shape and the morphology of self-assembling aggregates: a simulation study.

Authors:  Robert Vácha; Daan Frenkel
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

Review 2.  Structural systems biology and multiscale signaling models.

Authors:  Shannon E Telesco; Ravi Radhakrishnan
Journal:  Ann Biomed Eng       Date:  2012-04-27       Impact factor: 3.934

3.  Protein-mediated transformation of lipid vesicles into tubular networks.

Authors:  Mijo Simunovic; Carsten Mim; Thomas C Marlovits; Guenter Resch; Vinzenz M Unger; Gregory A Voth
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

4.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

5.  On the role of external force of actin filaments in the formation of tubular protrusions of closed membrane shapes with anisotropic membrane components.

Authors:  Luka Mesarec; Wojciech Góźdź; Samo Kralj; Miha Fošnarič; Samo Penič; Veronika Kralj-Iglič; Aleš Iglič
Journal:  Eur Biophys J       Date:  2017-05-09       Impact factor: 1.733

6.  Understanding the role of amphipathic helices in N-BAR domain driven membrane remodeling.

Authors:  Haosheng Cui; Carsten Mim; Francisco X Vázquez; Edward Lyman; Vinzenz M Unger; Gregory A Voth
Journal:  Biophys J       Date:  2013-01-22       Impact factor: 4.033

7.  A comparison of coarse-grained and continuum models for membrane bending in lipid bilayer fusion pores.

Authors:  Jejoong Yoo; Meyer B Jackson; Qiang Cui
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

8.  Phenomenology based multiscale models as tools to understand cell membrane and organelle morphologies.

Authors:  N Ramakrishnan; Ravi Radhakrishnan
Journal:  Adv Planar Lipid Bilayers Liposomes       Date:  2015

Review 9.  Multiscale simulations of protein-facilitated membrane remodeling.

Authors:  Aram Davtyan; Mijo Simunovic; Gregory A Voth
Journal:  J Struct Biol       Date:  2016-06-17       Impact factor: 2.867

10.  Thermodynamic free energy methods to investigate shape transitions in bilayer membranes.

Authors:  N Ramakrishnan; Richard W Tourdot; Ravi Radhakrishnan
Journal:  Int J Adv Eng Sci Appl Math       Date:  2016-01-22
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