Literature DB >> 28475297

Systems biology of cellular membranes: a convergence with biophysics.

Morgan Chabanon1, Jeanne C Stachowiak2, Padmini Rangamani1.   

Abstract

Systems biology and systems medicine have played an important role in the last two decades in shaping our understanding of biological processes. While systems biology is synonymous with network maps and '-omics' approaches, it is not often associated with mechanical processes. Here, we make the case for considering the mechanical and geometrical aspects of biological membranes as a key step in pushing the frontiers of systems biology of cellular membranes forward. We begin by introducing the basic components of cellular membranes, and highlight their dynamical aspects. We then survey the functions of the plasma membrane and the endomembrane system in signaling, and discuss the role and origin of membrane curvature in these diverse cellular processes. We further give an overview of the experimental and modeling approaches to study membrane phenomena. We close with a perspective on the converging futures of systems biology and membrane biophysics, invoking the need to include physical variables such as location and geometry in the study of cellular membranes. WIREs Syst Biol Med 2017, 9:e1386. doi: 10.1002/wsbm.1386 For further resources related to this article, please visit the WIREs website.
© 2017 Wiley Periodicals, Inc.

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Year:  2017        PMID: 28475297      PMCID: PMC5561455          DOI: 10.1002/wsbm.1386

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  247 in total

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Journal:  Cell       Date:  2000-10-13       Impact factor: 41.582

Review 2.  How proteins produce cellular membrane curvature.

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Review 4.  When Physics Takes Over: BAR Proteins and Membrane Curvature.

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Journal:  Trends Cell Biol       Date:  2015-10-28       Impact factor: 20.808

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Journal:  Biophys J       Date:  1981-04       Impact factor: 4.033

6.  Quantitative analysis of biological membrane lipids at the low picomole level by nano-electrospray ionization tandem mass spectrometry.

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Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-18       Impact factor: 11.205

7.  Role of transactivation of the EGF receptor in signalling by G-protein-coupled receptors.

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Review 8.  Biology under construction: in vitro reconstitution of cellular function.

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Journal:  Nat Rev Mol Cell Biol       Date:  2009-08-12       Impact factor: 94.444

9.  Separation of liquid phases in giant vesicles of ternary mixtures of phospholipids and cholesterol.

Authors:  Sarah L Veatch; Sarah L Keller
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

10.  Biogenesis of endoplasmic reticulum membranes. I. Structural and chemical differentiation in developing rat hepatocyte.

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Journal:  J Cell Biol       Date:  1966-07       Impact factor: 10.539

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  11 in total

1.  A physical mechanism of TANGO1-mediated bulky cargo export.

Authors:  Ishier Raote; Morgan Chabanon; Nikhil Walani; Marino Arroyo; Maria F Garcia-Parajo; Vivek Malhotra; Felix Campelo
Journal:  Elife       Date:  2020-11-10       Impact factor: 8.140

2.  Geometric coupling of helicoidal ramps and curvature-inducing proteins in organelle membranes.

Authors:  Morgan Chabanon; Padmini Rangamani
Journal:  J R Soc Interface       Date:  2019-09-04       Impact factor: 4.118

Review 3.  Functional link between plasma membrane spatiotemporal dynamics, cancer biology, and dietary membrane-altering agents.

Authors:  Alfredo Erazo-Oliveras; Natividad R Fuentes; Rachel C Wright; Robert S Chapkin
Journal:  Cancer Metastasis Rev       Date:  2018-09       Impact factor: 9.264

4.  Membrane signalosome: where biophysics meets systems biology.

Authors:  Sreeja K Kandy; Paul A Janmey; Ravi Radhakrishnan
Journal:  Curr Opin Syst Biol       Date:  2021-02-25

Review 5.  Synthetic cell division via membrane-transforming molecular assemblies.

Authors:  Simon Kretschmer; Kristina A Ganzinger; Henri G Franquelim; Petra Schwille
Journal:  BMC Biol       Date:  2019-05-24       Impact factor: 7.431

Review 6.  The Unique, the Known, and the Unknown of Spumaretrovirus Assembly.

Authors:  Dirk Lindemann; Sylvia Hütter; Guochao Wei; Martin Löchelt
Journal:  Viruses       Date:  2021-01-13       Impact factor: 5.048

7.  The role of traction in membrane curvature generation.

Authors:  H Alimohamadi; R Vasan; J E Hassinger; J C Stachowiak; P Rangamani
Journal:  Mol Biol Cell       Date:  2018-07-25       Impact factor: 4.138

Review 8.  Modeling Membrane Curvature Generation due to Membrane⁻Protein Interactions.

Authors:  Haleh Alimohamadi; Padmini Rangamani
Journal:  Biomolecules       Date:  2018-10-23

9.  Cell shape regulates subcellular organelle location to control early Ca2+ signal dynamics in vascular smooth muscle cells.

Authors:  R C Calizo; M K Bell; A Ron; M Hu; S Bhattacharya; N J Wong; W G M Janssen; G Perumal; P Pederson; S Scarlata; J Hone; E U Azeloglu; P Rangamani; R Iyengar
Journal:  Sci Rep       Date:  2020-10-20       Impact factor: 4.379

10.  ATP synthase: Evolution, energetics, and membrane interactions.

Authors:  Jasmine A Nirody; Itay Budin; Padmini Rangamani
Journal:  J Gen Physiol       Date:  2020-11-02       Impact factor: 4.086

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