Literature DB >> 23931319

Protein-mediated transformation of lipid vesicles into tubular networks.

Mijo Simunovic1, Carsten Mim, Thomas C Marlovits, Guenter Resch, Vinzenz M Unger, Gregory A Voth.   

Abstract

Key cellular processes are frequently accompanied by protein-facilitated shape changes in the plasma membrane. N-BAR-domain protein modules generate curvature by means of complex interactions with the membrane surface. The way they assemble and the mechanism by which they operate are largely dependent on their binding density. Although the mechanism at lower densities has recently begun to emerge, how membrane scaffolds form at high densities remains unclear. By combining electron microscopy and multiscale simulations, we show that N-BAR proteins at high densities can transform a lipid vesicle into a 3D tubular network. We show that this process is a consequence of excess adhesive energy combined with the local stiffening of the membrane, which occurs in a narrow range of mechanical properties of both the membrane and the protein. We show that lipid diffusion is significantly reduced by protein binding at this density regime and even more in areas of high Gaussian curvature, indicating a potential effect on molecular transport in cells. Finally, we reveal that the breaking of the bilayer topology is accompanied by the nematic arrangement of the protein on the surface, a structural motif that likely drives the formation of reticular structures in living cells.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23931319      PMCID: PMC3736692          DOI: 10.1016/j.bpj.2013.06.039

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

1.  Electrostatic repulsion of positively charged vesicles and negatively charged objects

Authors: 
Journal:  Science       Date:  1999-07-16       Impact factor: 47.728

2.  Coupling field theory with mesoscopic dynamical simulations of multicomponent lipid bilayers.

Authors:  J Liam McWhirter; Gary Ayton; Gregory A Voth
Journal:  Biophys J       Date:  2004-09-03       Impact factor: 4.033

3.  Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles.

Authors:  Anđela Sarić; Angelo Cacciuto
Journal:  Phys Rev Lett       Date:  2012-03-14       Impact factor: 9.161

Review 4.  Membrane curvature and mechanisms of dynamic cell membrane remodelling.

Authors:  Harvey T McMahon; Jennifer L Gallop
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

5.  The BAR domain superfamily: membrane-molding macromolecules.

Authors:  Adam Frost; Vinzenz M Unger; Pietro De Camilli
Journal:  Cell       Date:  2009-04-17       Impact factor: 41.582

6.  Reconstructing protein remodeled membranes in molecular detail from mesoscopic models.

Authors:  Edward Lyman; Haosheng Cui; Gregory A Voth
Journal:  Phys Chem Chem Phys       Date:  2011-04-18       Impact factor: 3.676

7.  A Hybrid Approach for Highly Coarse-grained Lipid Bilayer Models.

Authors:  Anand Srivastava; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2013-01-08       Impact factor: 6.006

8.  The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models.

Authors:  W G Noid; Jhih-Wei Chu; Gary S Ayton; Vinod Krishna; Sergei Izvekov; Gregory A Voth; Avisek Das; Hans C Andersen
Journal:  J Chem Phys       Date:  2008-06-28       Impact factor: 3.488

Review 9.  The BAR domain proteins: molding membranes in fission, fusion, and phagy.

Authors:  Gang Ren; Parimala Vajjhala; Janet S Lee; Barbara Winsor; Alan L Munn
Journal:  Microbiol Mol Biol Rev       Date:  2006-03       Impact factor: 11.056

10.  Membrane fission is promoted by insertion of amphipathic helices and is restricted by crescent BAR domains.

Authors:  Emmanuel Boucrot; Adi Pick; Gamze Çamdere; Nicole Liska; Emma Evergren; Harvey T McMahon; Michael M Kozlov
Journal:  Cell       Date:  2012-03-30       Impact factor: 41.582

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  31 in total

Review 1.  Molecular dynamics simulations of large macromolecular complexes.

Authors:  Juan R Perilla; Boon Chong Goh; C Keith Cassidy; Bo Liu; Rafael C Bernardi; Till Rudack; Hang Yu; Zhe Wu; Klaus Schulten
Journal:  Curr Opin Struct Biol       Date:  2015-04-04       Impact factor: 6.809

Review 2.  BAR domain proteins-a linkage between cellular membranes, signaling pathways, and the actin cytoskeleton.

Authors:  Peter J Carman; Roberto Dominguez
Journal:  Biophys Rev       Date:  2018-11-19

Review 3.  When Physics Takes Over: BAR Proteins and Membrane Curvature.

Authors:  Mijo Simunovic; Gregory A Voth; Andrew Callan-Jones; Patricia Bassereau
Journal:  Trends Cell Biol       Date:  2015-10-28       Impact factor: 20.808

4.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

5.  Phenomenology based multiscale models as tools to understand cell membrane and organelle morphologies.

Authors:  N Ramakrishnan; Ravi Radhakrishnan
Journal:  Adv Planar Lipid Bilayers Liposomes       Date:  2015

6.  How curvature-generating proteins build scaffolds on membrane nanotubes.

Authors:  Mijo Simunovic; Emma Evergren; Ivan Golushko; Coline Prévost; Henri-François Renard; Ludger Johannes; Harvey T McMahon; Vladimir Lorman; Gregory A Voth; Patricia Bassereau
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-21       Impact factor: 11.205

Review 7.  Multiscale simulations of protein-facilitated membrane remodeling.

Authors:  Aram Davtyan; Mijo Simunovic; Gregory A Voth
Journal:  J Struct Biol       Date:  2016-06-17       Impact factor: 2.867

8.  The mesoscopic membrane with proteins (MesM-P) model.

Authors:  Aram Davtyan; Mijo Simunovic; Gregory A Voth
Journal:  J Chem Phys       Date:  2017-07-28       Impact factor: 3.488

Review 9.  Dynamics and instabilities of lipid bilayer membrane shapes.

Authors:  Zheng Shi; Tobias Baumgart
Journal:  Adv Colloid Interface Sci       Date:  2014-01-25       Impact factor: 12.984

10.  Physical Characterization of Triolein and Implications for Its Role in Lipid Droplet Biogenesis.

Authors:  Siyoung Kim; Gregory A Voth
Journal:  J Phys Chem B       Date:  2021-06-17       Impact factor: 2.991

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