Literature DB >> 16461400

Toward the understanding of MNEI sweetness from hydration map surfaces.

Alfonso De Simone1, Roberta Spadaccini, Piero A Temussi, Franca Fraternali.   

Abstract

The binding mechanism of sweet proteins to their receptor, a G-protein-coupled receptor, is not supported by direct structural information. In principle, the key groups responsible for biological activity (glucophores) can be localized on a small structural unit (sweet finger) or spread on a larger surface area. A recently proposed model, called "wedge model", implies a large surface of interaction with the receptor. To explore this model in greater detail, it is necessary to examine the physicochemical features of the surfaces of sweet proteins, since their interaction with the receptor, with respect to that of small sweeteners, is more dependent on general physicochemical properties of the interface, such as electrostatic potential and hydration. In this study, we performed exhaustive molecular dynamics simulations in explicit water of the sweet protein MNEI and of its structural mutant G-16A, whose sweetness is one order of magnitude lower than that of MNEI. Solvent density and self-diffusion calculated from molecular dynamics simulations suggest a likely area of interaction delimited by four stretches arranged as a tetrahedron whose shape is complementary to that of a cavity on the surface of the receptor, in agreement with the wedge model. The suggested area of interaction is amazingly consistent with known mutagenesis data. In addition, the asymmetric hydration of the only helix in both proteins hints at a specific role for this secondary structure element in orienting the protein during the binding process.

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Year:  2006        PMID: 16461400      PMCID: PMC1432101          DOI: 10.1529/biophysj.105.073171

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  33 in total

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Authors:  R Spadaccini; O Crescenzi; T Tancredi; N De Casamassimi ; G Saviano; R Scognamiglio; A Di Donato ; P A Temussi
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Interaction of sweet proteins with their receptor. A conformational study of peptides corresponding to loops of brazzein, monellin and thaumatin.

Authors:  Teodorico Tancredi; Annalisa Pastore; Severo Salvadori; Veronica Esposito; Piero A Temussi
Journal:  Eur J Biochem       Date:  2004-06

3.  Dynamite: a simple way to gain insight into protein motions.

Authors:  C Paul Barrett; Benjamin A Hall; Martin E M Noble
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

4.  From small sweeteners to sweet proteins: anatomy of the binding sites of the human T1R2_T1R3 receptor.

Authors:  Gabriella Morini; Angela Bassoli; Piero A Temussi
Journal:  J Med Chem       Date:  2005-08-25       Impact factor: 7.446

5.  Molecular genetic identification of a candidate receptor gene for sweet taste.

Authors:  M Kitagawa; Y Kusakabe; H Miura; Y Ninomiya; A Hino
Journal:  Biochem Biophys Res Commun       Date:  2001-04-27       Impact factor: 3.575

6.  NMR studies of protein hydration and TEMPOL accessibility.

Authors:  Neri Niccolai; Ottavia Spiga; Andrea Bernini; Maria Scarselli; Arianna Ciutti; Irene Fiaschi; Stefano Chiellini; Henriette Molinari; Piero A Temussi
Journal:  J Mol Biol       Date:  2003-09-12       Impact factor: 5.469

7.  Solvent effects on protein motion and protein effects on solvent motion. Dynamics of the active site region of lysozyme.

Authors:  C L Brooks; M Karplus
Journal:  J Mol Biol       Date:  1989-07-05       Impact factor: 5.469

8.  The taste-active regions of monellin, a potently sweet protein.

Authors:  J R Somoza; J M Cho; S H Kim
Journal:  Chem Senses       Date:  1995-02       Impact factor: 3.160

9.  Essential dynamics of proteins.

Authors:  A Amadei; A B Linssen; H J Berendsen
Journal:  Proteins       Date:  1993-12

10.  Hydration at the surface of the protein Monellin: dynamics with femtosecond resolution.

Authors:  Jorge Peon; Samir Kumar Pal; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

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  12 in total

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4.  Guanidinoneomycin B recognition of an HIV-1 RNA helix.

Authors:  David W Staple; Vincenzo Venditti; Neri Niccolai; Lev Elson-Schwab; Yitzhak Tor; Samuel E Butcher
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7.  Implicit Solvation Parameters Derived from Explicit Water Forces in Large-Scale Molecular Dynamics Simulations.

Authors:  Jens Kleinjung; Walter R P Scott; Jane R Allison; Wilfred F van Gunsteren; Franca Fraternali
Journal:  J Chem Theory Comput       Date:  2012-06-12       Impact factor: 6.006

8.  Measuring the dynamic surface accessibility of RNA with the small paramagnetic molecule TEMPOL.

Authors:  Vincenzo Venditti; Neri Niccolai; Samuel E Butcher
Journal:  Nucleic Acids Res       Date:  2007-12-01       Impact factor: 16.971

9.  Molecular Dynamics Driven Design of pH-Stabilized Mutants of MNEI, a Sweet Protein.

Authors:  Serena Leone; Delia Picone
Journal:  PLoS One       Date:  2016-06-24       Impact factor: 3.240

10.  Sweeter and stronger: enhancing sweetness and stability of the single chain monellin MNEI through molecular design.

Authors:  Serena Leone; Andrea Pica; Antonello Merlino; Filomena Sannino; Piero Andrea Temussi; Delia Picone
Journal:  Sci Rep       Date:  2016-09-23       Impact factor: 4.379

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