Literature DB >> 12948493

NMR studies of protein hydration and TEMPOL accessibility.

Neri Niccolai1, Ottavia Spiga, Andrea Bernini, Maria Scarselli, Arianna Ciutti, Irene Fiaschi, Stefano Chiellini, Henriette Molinari, Piero A Temussi.   

Abstract

Understanding the mechanisms of the interaction between a protein surface and its outer molecular environment is of primary relevance for the rational design of new drugs and engineered proteins. Protein surface accessibility is emerging as a new dimension of Structural Biology, since NMR methods have been developed to follow how molecules, even those different from physiological ligands, preferentially approach specific regions of the protein surface. Hen egg-white lysozyme, a paradigmatic example of the state of the art of protein structure and dynamics, has been selected as a model system to study protein surface accessibility. Bound water and soluble spin-labels have been used to investigate the interaction of this enzyme, both free and bound to the inhibitor (NAG)(3), with its molecular environment. No tightly bound water molecules were found inside the enzyme active site, which, conversely, appeared as the most exposed to visits from the soluble paramagnetic probe TEMPOL. From the presented set of data, an integrated view of lysozyme surface accessibility towards water and TEMPOL molecules is obtained.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 12948493     DOI: 10.1016/s0022-2836(03)00852-0

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  12 in total

1.  Molecular dynamics of a protein surface: ion-residues interactions.

Authors:  Ran Friedman; Esther Nachliel; Menachem Gutman
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

Review 2.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

3.  Approaches for the measurement of solvent exposure in proteins by 19F NMR.

Authors:  Julianne L Kitevski-LeBlanc; Ferenc Evanics; R Scott Prosser
Journal:  J Biomol NMR       Date:  2009-08-05       Impact factor: 2.835

4.  Guanidinoneomycin B recognition of an HIV-1 RNA helix.

Authors:  David W Staple; Vincenzo Venditti; Neri Niccolai; Lev Elson-Schwab; Yitzhak Tor; Samuel E Butcher
Journal:  Chembiochem       Date:  2008-01-04       Impact factor: 3.164

5.  Toward the understanding of MNEI sweetness from hydration map surfaces.

Authors:  Alfonso De Simone; Roberta Spadaccini; Piero A Temussi; Franca Fraternali
Journal:  Biophys J       Date:  2006-02-03       Impact factor: 4.033

Review 6.  Determining the orientation and localization of membrane-bound peptides.

Authors:  Walter Hohlweg; Simone Kosol; Klaus Zangger
Journal:  Curr Protein Pept Sci       Date:  2012-05       Impact factor: 3.272

7.  Hydration studies on the archaeal protein Sso7d using NMR measurements and MD simulations.

Authors:  Andrea Bernini; Ottavia Spiga; Roberto Consonni; Ivana Arosio; Paola Fusi; Simone Cirri; Annamaria Guagliardi; Neri Niccolai
Journal:  BMC Struct Biol       Date:  2011-10-21

8.  High sensitivity 1H-NMR spectroscopy of homeopathic remedies made in water.

Authors:  David J Anick
Journal:  BMC Complement Altern Med       Date:  2004-11-01       Impact factor: 3.659

Review 9.  Studying the structure and dynamics of biomolecules by using soluble paramagnetic probes.

Authors:  Henry G Hocking; Klaus Zangger; Tobias Madl
Journal:  Chemphyschem       Date:  2013-07-08       Impact factor: 3.102

10.  Measuring the dynamic surface accessibility of RNA with the small paramagnetic molecule TEMPOL.

Authors:  Vincenzo Venditti; Neri Niccolai; Samuel E Butcher
Journal:  Nucleic Acids Res       Date:  2007-12-01       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.