Literature DB >> 16451035

Theoretical models on the Cu2O2 torture track: mechanistic implications for oxytyrosinase and small-molecule analogues.

Christopher J Cramer1, Marta Włoch, Piotr Piecuch, Cristina Puzzarini, Laura Gagliardi.   

Abstract

Accurately describing the relative energetics of alternative bis(mu-oxo) and mu-eta2:eta2 peroxo isomers of Cu2O2 cores supported by 0, 2, 4, and 6 ammonia ligands is remarkably challenging for a wide variety of theoretical models, primarily owing to the difficulty of maintaining a balanced description of rapidly changing dynamical and nondynamical electron correlation effects and a varying degree of biradical character along the isomerization coordinate. The completely renormalized coupled-cluster level of theory including triple excitations and extremely efficient pure density functional levels of theory quantitatively agree with one another and also agree qualitatively with experimental results for Cu2O2 cores supported by analogous but larger ligands. Standard coupled-cluster methods, such as CCSD(T), are in most cases considerably less accurate and exhibit poor convergence in predicted relative energies. Hybrid density functionals significantly underestimate the stability of the bis(mu-oxo) form, with the magnitude of the error being directly proportional to the percentage Hartree-Fock exchange in the functional. Single-root CASPT2 multireference second-order perturbation theory, by contrast, significantly overestimates the stability of bis(mu-oxo) isomers. Implications of these results for modeling the mechanism of C-H bond activation by supported Cu2O2 cores, like that found in the active site of oxytyrosinase, are discussed.

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Year:  2006        PMID: 16451035     DOI: 10.1021/jp056791e

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  21 in total

1.  The performance of hybrid DFT for mechanisms involving transition metal complexes in enzymes.

Authors:  Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2006-07-08       Impact factor: 3.358

2.  Theoretical modelling of tripodal CuN3 and CuN4 cuprous complexes interacting with O2, CO or CH3CN.

Authors:  Aurélien de la Lande; Hélène Gérard; Vicent Moliner; Guillaume Izzet; Olivia Reinaud; Olivier Parisel
Journal:  J Biol Inorg Chem       Date:  2006-05-17       Impact factor: 3.358

3.  Correlated wavefunction methods in bioinorganic chemistry.

Authors:  Frank Neese; Dimitrios G Liakos; Shengfa Ye
Journal:  J Biol Inorg Chem       Date:  2011-05-05       Impact factor: 3.358

4.  Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities.

Authors:  Konstantinos D Vogiatzis; Mikhail V Polynski; Justin K Kirkland; Jacob Townsend; Ali Hashemi; Chong Liu; Evgeny A Pidko
Journal:  Chem Rev       Date:  2018-10-30       Impact factor: 60.622

Review 5.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

Review 6.  Mono- and binuclear non-heme iron chemistry from a theoretical perspective.

Authors:  Tibor András Rokob; Jakub Chalupský; Daniel Bím; Prokopis C Andrikopoulos; Martin Srnec; Lubomír Rulíšek
Journal:  J Biol Inorg Chem       Date:  2016-05-26       Impact factor: 3.358

7.  Validation of density functional modeling protocols on experimental bis(mu-oxo)/mu-eta2:eta2-peroxo dicopper equilibria.

Authors:  John L Lewin; David E Heppner; Christopher J Cramer
Journal:  J Biol Inorg Chem       Date:  2007-08-21       Impact factor: 3.358

8.  Structural and mechanistic insights into the oxy form of tyrosinase from molecular dynamics simulations.

Authors:  Robert J Deeth; Christian Diedrich
Journal:  J Biol Inorg Chem       Date:  2009-08-19       Impact factor: 3.358

9.  Mononuclear Cu-O2 complexes: geometries, spectroscopic properties, electronic structures, and reactivity.

Authors:  Christopher J Cramer; William B Tolman
Journal:  Acc Chem Res       Date:  2007-04-26       Impact factor: 22.384

10.  Comments on the nature of the bonding in oxygenated dinuclear copper enzyme models.

Authors:  Jean-Philip Piquemal; Julien Pilmé
Journal:  J Mol Struct       Date:  2006-05-30       Impact factor: 3.196

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