Literature DB >> 16433548

Alkaline phosphatase mono- and diesterase reactions: comparative transition state analysis.

Jesse G Zalatan1, Daniel Herschlag.   

Abstract

Enzyme-catalyzed phosphoryl transfer reactions have frequently been suggested to proceed through transition states that are altered from their solution counterparts. Previous work with Escherichia coli alkaline phosphatase (AP), however, suggests that this enzyme catalyzes the hydrolysis of phosphate monoesters through a loose, dissociative transition state, similar to that in solution. AP also exhibits catalytic promiscuity, with a low level of phosphodiesterase activity, despite the tighter, more associative transition state for phosphate diester hydrolysis in solution. Because AP is evolutionarily optimized for phosphate monoester hydrolysis, it is possible that the active site environment alters the transition state for diester hydrolysis to be looser in its bonding to the incoming and outgoing groups. To test this possibility, we have measured the nonenzymatic and AP-catalyzed rate of reaction for a series of substituted methyl phenyl phosphate diesters. The values of beta(lg) and additional data suggest that the transition state for AP-catalyzed phosphate diester hydrolysis is indistinguishable from that in solution. Instead of altering transition state structure, AP catalyzes phosphoryl transfer reactions by recognizing and stabilizing transition states similar to those in aqueous solution. The AP active site therefore has the ability to recognize different transition states, a property that could assist in the evolutionary optimization of promiscuous activities.

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Year:  2006        PMID: 16433548      PMCID: PMC2538955          DOI: 10.1021/ja056528r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  53 in total

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Review 4.  Enzyme recruitment in evolution of new function.

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5.  Reaction mechanism of alkaline phosphatase based on crystal structures. Two-metal ion catalysis.

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Journal:  J Mol Biol       Date:  1991-03-20       Impact factor: 5.469

6.  Leaving group dependence in the phosphorylation of Escherichia coli alkaline phosphatase by monophosphate esters.

Authors:  A D Hall; A Williams
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Review 7.  Structure and mechanism of alkaline phosphatase.

Authors:  J E Coleman
Journal:  Annu Rev Biophys Biomol Struct       Date:  1992

8.  Mechanistic studies of protein tyrosine phosphatases YopH and Cdc25A with m-nitrobenzyl phosphate.

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Authors:  Adam G Cassano; Vernon E Anderson; Michael E Harris
Journal:  Biochemistry       Date:  2004-08-17       Impact factor: 3.162

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  37 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-27       Impact factor: 11.205

2.  Kinetic Effects of β,γ-Modified Deoxynucleoside 5'-Triphosphate Analogues on RNA-Catalyzed Polymerization of DNA.

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Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-16       Impact factor: 11.205

4.  A Transition-State Perspective on Y-Family DNA Polymerase η Fidelity in Comparison with X-Family DNA Polymerases λ and β.

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Review 6.  Experimental analyses of the chemical dynamics of ribozyme catalysis.

Authors:  Michael E Harris; Adam G Cassano
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7.  Comparative enzymology in the alkaline phosphatase superfamily to determine the catalytic role of an active-site metal ion.

Authors:  Jesse G Zalatan; Timothy D Fenn; Daniel Herschlag
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8.  QM/MM Analysis of Transition States and Transition State Analogues in Metalloenzymes.

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Journal:  Methods Enzymol       Date:  2016-07-01       Impact factor: 1.600

Review 9.  Why nature really chose phosphate.

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10.  Arginine coordination in enzymatic phosphoryl transfer: evaluation of the effect of Arg166 mutations in Escherichia coli alkaline phosphatase.

Authors:  Patrick J O'Brien; Jonathan Kyle Lassila; Timothy D Fenn; Jesse G Zalatan; Daniel Herschlag
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