Literature DB >> 16407319

Origin of informational polymers: differential stability of phosphoester bonds in ribomonomers and ribooligomers.

Raffaele Saladino1, Claudia Crestini, Fabiana Ciciriello, Ernesto Di Mauro, Giovanna Costanzo.   

Abstract

We have measured the stabilities of the bonds that are critical for determining the half-life of ribonucleotides and the beta-glycosidic and 3'- and 5'-phosphoester bonds. Stabilities were measured under a wide range of temperatures and water/formamide ratios. The stability of phosphodiester bonds in oligoribonucleotides was determined in the same environments. The comparison of bond stabilities in the monomer versus the polymer forms of the ribo compounds revealed that physico-chemical conditions exist in which polymerization is thermodynamically favored. These conditions were compared with those determining a similar behavior for 2'-deoxyribonucleosides, deoxyribonucleotides, and deoxyribooligonucleotides and were shown to profoundly differ. The implications of these facts on the origin of informational polymers are discussed.

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Year:  2006        PMID: 16407319     DOI: 10.1074/jbc.M512545200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  17 in total

1.  Nonenzymatic RNA ligation in water.

Authors:  Samanta Pino; Fabiana Ciciriello; Giovanna Costanzo; Ernesto Di Mauro
Journal:  J Biol Chem       Date:  2008-10-31       Impact factor: 5.157

2.  Catalytic effects of Murchison material: prebiotic synthesis and degradation of RNA precursors.

Authors:  Raffaele Saladino; Claudia Crestini; Cristina Cossetti; Ernesto Di Mauro; David Deamer
Journal:  Orig Life Evol Biosph       Date:  2011-04-12       Impact factor: 1.950

3.  May cyclic nucleotides be a source for abiotic RNA synthesis?

Authors:  Giovanna Costanzo; Samanta Pino; Giorgia Botta; Raffaele Saladino; Ernesto Di Mauro
Journal:  Orig Life Evol Biosph       Date:  2011-12-03       Impact factor: 1.950

4.  Origin of first cells at terrestrial, anoxic geothermal fields.

Authors:  Armen Y Mulkidjanian; Andrew Yu Bychkov; Daria V Dibrova; Michael Y Galperin; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-13       Impact factor: 11.205

5.  The role of the formamide/zirconia system in the synthesis of nucleobases and biogenic carboxylic acid derivatives.

Authors:  Raffaele Saladino; Veronica Neri; Claudia Crestini; Giovanna Costanzo; Michele Graciotti; Ernesto Di Mauro
Journal:  J Mol Evol       Date:  2010-07-28       Impact factor: 2.395

6.  Formamide as the main building block in the origin of nucleic acids.

Authors:  Giovanna Costanzo; Raffaele Saladino; Claudia Crestini; Fabiana Ciciriello; Ernesto Di Mauro
Journal:  BMC Evol Biol       Date:  2007-08-16       Impact factor: 3.260

7.  High-energy chemistry of formamide: a unified mechanism of nucleobase formation.

Authors:  Martin Ferus; David Nesvorný; Jiří Šponer; Petr Kubelík; Regina Michalčíková; Violetta Shestivská; Judit E Šponer; Svatopluk Civiš
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-08       Impact factor: 11.205

8.  Generation of long RNA chains in water.

Authors:  Giovanna Costanzo; Samanta Pino; Fabiana Ciciriello; Ernesto Di Mauro
Journal:  J Biol Chem       Date:  2009-10-02       Impact factor: 5.157

9.  Chemical and biological effects of substitution of the 2-position of ring-expanded ('fat') nucleosides containing the imidazo[4,5-e][1,3]diazepine-4,8-dione ring system: the role of electronic and steric factors on glycosidic bond stability and anti-HCV activity.

Authors:  Peng Zhang; Ning Zhang; Victor E Buckwold; Ramachandra S Hosmane
Journal:  Bioorg Med Chem       Date:  2007-04-29       Impact factor: 3.641

10.  From formamide to RNA, the path is tenuous but continuous.

Authors:  Samanta Pino; Judit E Sponer; Giovanna Costanzo; Raffaele Saladino; Ernesto Di Mauro
Journal:  Life (Basel)       Date:  2015-01-30
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