Literature DB >> 22314910

Hydrostatic and osmotic pressure study of the RNA hydration.

Małgorzata Giel-Pietraszuk1, Jan Barciszewski.   

Abstract

The tertiary structure of nucleic acids results from an equilibrium between electrostatic interactions of phosphates, stacking interactions of bases, hydrogen bonds between polar atoms and water molecules. Water interactions with ribonucleic acid play a key role in its structure formation, stabilization and dynamics. We used high hydrostatic pressure and osmotic pressure to analyze changes in RNA hydration. We analyzed the lead catalyzed hydrolysis of tRNAPhe from S. cerevisiae as well as hydrolytic activity of leadzyme. Pb(II) induced hydrolysis of the single phosphodiester bond in tRNAPhe is accompanied by release of 98 water molecules, while other molecule, leadzyme releases 86.

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Year:  2012        PMID: 22314910      PMCID: PMC3310992          DOI: 10.1007/s11033-012-1452-z

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  37 in total

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Review 2.  Linear and non-linear pressure dependence of enzyme catalytic parameters.

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Journal:  Biochim Biophys Acta       Date:  2005-08-05

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Journal:  J Am Chem Soc       Date:  2006-01-11       Impact factor: 15.419

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Journal:  Biochemistry       Date:  1998-06-02       Impact factor: 3.162

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Journal:  Biochimie       Date:  1996       Impact factor: 4.079

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Journal:  Biochemistry       Date:  1985-08-27       Impact factor: 3.162

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Authors:  M Z Barciszewska; V A Erdmann; J Barciszewski
Journal:  Phytochemistry       Date:  1994-09       Impact factor: 4.072

9.  Pb(II)-catalysed cleavage of the sugar-phosphate backbone of yeast tRNAPhe--implications for lead toxicity and self-splicing RNA.

Authors:  R S Brown; B E Hingerty; J C Dewan; A Klug
Journal:  Nature       Date:  1983 Jun 9-15       Impact factor: 49.962

10.  Properties of an in vitro selected Pb2+ cleavage motif.

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Journal:  Biochemistry       Date:  1994-08-16       Impact factor: 3.162

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  3 in total

Review 1.  The structural stability and catalytic activity of DNA and RNA oligonucleotides in the presence of organic solvents.

Authors:  Shu-Ichi Nakano; Naoki Sugimoto
Journal:  Biophys Rev       Date:  2016-01-11

2.  Hammerhead ribozyme activity and oligonucleotide duplex stability in mixed solutions of water and organic compounds.

Authors:  Shu-Ichi Nakano; Yuichi Kitagawa; Daisuke Miyoshi; Naoki Sugimoto
Journal:  FEBS Open Bio       Date:  2014-07-03       Impact factor: 2.693

3.  Optimal molecular crowding accelerates group II intron folding and maximizes catalysis.

Authors:  Bishnu P Paudel; Erica Fiorini; Richard Börner; Roland K O Sigel; David S Rueda
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-05       Impact factor: 11.205

  3 in total

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