Literature DB >> 18214461

Thermal fluctuations of DNA enclosed by glycerol-water glassy matrices: an elastic neutron scattering investigation.

E Cornicchi1, S Capponi, M Marconi, G Onori, A Paciaroni.   

Abstract

Through elastic neutron scattering measurements, we investigated the thermal fluctuations of DNA enclosed by glycerol-water glassy matrices, at different levels of hydration, over the wide temperature range from 20 to 300 K. For all the samples, the extracted hydrogen mean square displacements (MSD) show a purely vibrational harmonic trend at very low temperatures, and a first onset of anharmonic dynamics above approximately 100 K. Such onset is consistent with the activation of DNA methyl group rotational motions. Then, at a certain temperature Td, the MSD show a second onset of anharmonicity, which corresponds to the DNA dynamical transition. The Td values vary as a function of the hydration degree of the environment. The crucial role of the solvent mobility to activate the DNA thermal fluctuations is proposed, together with a preferential hydration effect of the DNA phosphate groups. Finally, a comparison between the average mobility of homologous samples of DNA and the lysozyme protein is considered.

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Year:  2008        PMID: 18214461     DOI: 10.1007/s00249-008-0268-1

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  22 in total

1.  Structural stability of DNA in nonaqueous solvents.

Authors:  G Bonner; A M Klibanov
Journal:  Biotechnol Bioeng       Date:  2000-05-05       Impact factor: 4.530

Review 2.  How soft is a protein? A protein dynamics force constant measured by neutron scattering.

Authors:  G Zaccai
Journal:  Science       Date:  2000-06-02       Impact factor: 47.728

3.  Effect of the environment on the protein dynamical transition: a neutron scattering study.

Authors:  Alessandro Paciaroni; Stefania Cinelli; Giuseppe Onori
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

4.  DNA-mediated charge transport requires conformational motion of the DNA bases: elimination of charge transport in rigid glasses at 77 K.

Authors:  Melanie A O'Neill; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2004-10-20       Impact factor: 15.419

5.  Onsets of anharmonicity in protein dynamics.

Authors:  J H Roh; V N Novikov; R B Gregory; J E Curtis; Z Chowdhuri; A P Sokolov
Journal:  Phys Rev Lett       Date:  2005-07-12       Impact factor: 9.161

6.  Controlling the protein dynamical transition with sugar-based bioprotectant matrices: a neutron scattering study.

Authors:  E Cornicchi; M Marconi; G Onori; A Paciaroni
Journal:  Biophys J       Date:  2006-04-14       Impact factor: 4.033

7.  Dynamic transition in tRNA is solvent induced.

Authors:  Gokhan Caliskan; Robert M Briber; D Thirumalai; Victoria Garcia-Sakai; Sarah A Woodson; Alexei P Sokolov
Journal:  J Am Chem Soc       Date:  2006-01-11       Impact factor: 15.419

8.  The composition of the deoxyribonucleic acid of salmon sperm.

Authors:  E CHARGAFF; R LIPSHITZ; C GREEN; M E HODES
Journal:  J Biol Chem       Date:  1951-09       Impact factor: 5.157

9.  Slow relaxation process in DNA.

Authors:  A P Sokolov; H Grimm; A Kisliuk; A J Dianoux
Journal:  J Biol Phys       Date:  2001-12       Impact factor: 1.365

10.  Sequential hydration of a dry globular protein.

Authors:  P L Poole; J L Finney
Journal:  Biopolymers       Date:  1983-01       Impact factor: 2.505

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