Literature DB >> 16373476

Stereoelectronic effects on polyproline conformation.

Jia-Cherng Horng1, Ronald T Raines.   

Abstract

The polyproline type II (PPII) helix is a prevalent conformation in both folded and unfolded proteins, and is known to play important roles in a wide variety of biological processes. Polyproline itself can also form a type I (PPI) helix, which has a disparate conformation. Here, we use derivatives of polyproline, (Pro)10, (Hyp)10, (Flp)10, and (flp)10, where Hyp is (2S,4R)-4-hydroxyproline, Flp is (2S,4R)-4-fluoroproline, and flp is (2S,4S)-4-fluoroproline, to probe for a stereoelectronic effect on the conformation of polyproline. Circular dichroism spectral analyses show that 4R electron-with-drawing substituents stabilize a PPII helix relative to a PPI helix, even in a solvent that favors the PPI conformation, such as n-propanol. The stereochemistry at C4 ordains the relative stability of PPI and PPII helices, as (flp)10 forms a mixture of PPI and PPII helices in water and a PPI helix in n-propanol. The conformational preferences of (Pro)10 are intermediate between those of (Hyp)10/(Flp)10 and (flp)10. Interestingly, PPI helices of (flp)10 exhibit cold denaturation in n-propanol with a value of T(s) near 70 degrees C. Together, these data show that stereoelectronic effects can have a substantial impact on polyproline conformation and provide a rational means to stabilize a PPI or PPII helix.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16373476      PMCID: PMC2242370          DOI: 10.1110/ps.051779806

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  44 in total

1.  Host-guest study of left-handed polyproline II helix formation.

Authors:  M A Kelly; B W Chellgren; A L Rucker; J M Troutman; M G Fried; A F Miller; T P Creamer
Journal:  Biochemistry       Date:  2001-12-04       Impact factor: 3.162

2.  Conformational stability of collagen relies on a stereoelectronic effect.

Authors:  L E Bretscher; C L Jenkins; K M Taylor; M L DeRider; R T Raines
Journal:  J Am Chem Soc       Date:  2001-01-31       Impact factor: 15.419

3.  Polyproline II helical structure in protein unfolded states: lysine peptides revisited.

Authors:  Adam L Rucker; Trevor P Creamer
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

4.  Thermodynamic Origin of Prolyl Peptide Bond Isomers.

Authors:  Eric S Eberhardt; Stewart N Loh; Ronald T Raines
Journal:  Tetrahedron Lett       Date:  1993-05-07       Impact factor: 2.415

5.  Properties of polyproline II, a secondary structure element implicated in protein-protein interactions.

Authors:  M V Cubellis; F Caillez; T L Blundell; S C Lovell
Journal:  Proteins       Date:  2005-03-01

6.  Phi/psi-chology: Ramachandran revisited.

Authors:  G J Kleywegt; T A Jones
Journal:  Structure       Date:  1996-12-15       Impact factor: 5.006

7.  Collagen stability: insights from NMR spectroscopic and hybrid density functional computational investigations of the effect of electronegative substituents on prolyl ring conformations.

Authors:  Michele L DeRider; Steven J Wilkens; Michael J Waddell; Lynn E Bretscher; Frank Weinhold; Ronald T Raines; John L Markley
Journal:  J Am Chem Soc       Date:  2002-03-20       Impact factor: 15.419

8.  Stable conformations of tripeptides in aqueous solution studied by UV circular dichroism spectroscopy.

Authors:  Fatma Eker; Kai Griebenow; Reinhard Schweitzer-Stenner
Journal:  J Am Chem Soc       Date:  2003-07-09       Impact factor: 15.419

9.  Theory of the cooperative transition between two ordered conformations of poly(L-proline). III. Molecular theory in the presence of solvent.

Authors:  S Tanaka; H A Scheraga
Journal:  Macromolecules       Date:  1975 Jul-Aug       Impact factor: 5.985

10.  CD of proline-rich polypeptides: application to the study of the repetitive domain of maize glutelin-2.

Authors:  F Rabanal; M D Ludevid; M Pons; E Giralt
Journal:  Biopolymers       Date:  1993-07       Impact factor: 2.505

View more
  53 in total

1.  Non-covalent interactions: Fold globally, bond locally.

Authors:  Neal J Zondlo
Journal:  Nat Chem Biol       Date:  2010-08       Impact factor: 15.040

2.  Construction of peptoids with all trans-amide backbones and peptoid reverse turns via the tactical incorporation of N-aryl side chains capable of hydrogen bonding.

Authors:  Joseph R Stringer; J Aaron Crapster; Ilia A Guzei; Helen E Blackwell
Journal:  J Org Chem       Date:  2010-09-17       Impact factor: 4.354

3.  Phosphorylation Increases Persistence Length and End-to-End Distance of a Segment of Tau Protein.

Authors:  Alexander F Chin; Dmitri Toptygin; W Austin Elam; Travis P Schrank; Vincent J Hilser
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

4.  2005 Emil Thomas Kaiser Award.

Authors:  Ronald T Raines
Journal:  Protein Sci       Date:  2006-05       Impact factor: 6.725

5.  Stabilization of the collagen triple helix by O-methylation of hydroxyproline residues.

Authors:  Frank W Kotch; Ilia A Guzei; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2008-02-14       Impact factor: 15.419

6.  Stereoelectronic and steric effects in side chains preorganize a protein main chain.

Authors:  Matthew D Shoulders; Kenneth A Satyshur; Katrina T Forest; Ronald T Raines
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-31       Impact factor: 11.205

7.  Signature of n→π* interactions in α-helices.

Authors:  Amit Choudhary; Ronald T Raines
Journal:  Protein Sci       Date:  2011-04-26       Impact factor: 6.725

8.  Analysis of Density Functional Tight Binding with Natural Bonding Orbitals.

Authors:  Xiya Lu; Juan Duchimaza-Heredia; Qiang Cui
Journal:  J Phys Chem A       Date:  2019-08-15       Impact factor: 2.781

9.  Stereoelectronic effects on the transition barrier of polyproline conformational interconversion.

Authors:  Yi-Chun Chiang; Yu-Ju Lin; Jia-Cherng Horng
Journal:  Protein Sci       Date:  2009-09       Impact factor: 6.725

10.  Nature of amide carbonyl--carbonyl interactions in proteins.

Authors:  Amit Choudhary; Deepa Gandla; Grant R Krow; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.