Literature DB >> 16339314

Topology of biological networks and reliability of information processing.

Konstantin Klemm1, Stefan Bornholdt.   

Abstract

Survival of living cells and organisms is largely based on highly reliable function of their regulatory networks. However, the elements of biological networks, e.g., regulatory genes in genetic networks or neurons in the nervous system, are far from being reliable dynamical elements. How can networks of unreliable elements perform reliably? We here address this question in networks of autonomous noisy elements with fluctuating timing and study the conditions for an overall system behavior being reproducible in the presence of such noise. We find a clear distinction between reliable and unreliable dynamical attractors. In the reliable case, synchrony is sustained in the network, whereas in the unreliable scenario, fluctuating timing of single elements can gradually desynchronize the system, leading to nonreproducible behavior. The likelihood of reliable dynamical attractors strongly depends on the underlying topology of a network. Comparing with the observed architectures of gene regulation networks, we find that those 3-node subgraphs that allow for reliable dynamics are also those that are more abundant in nature, suggesting that specific topologies of regulatory networks may provide a selective advantage in evolution through their resistance against noise.

Mesh:

Year:  2005        PMID: 16339314      PMCID: PMC1317958          DOI: 10.1073/pnas.0509132102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

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5.  The role of certain Post classes in Boolean network models of genetic networks.

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8.  From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.

Authors:  D Thieffry; A M Huerta; E Pérez-Rueda; J Collado-Vides
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Authors: 
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Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

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  46 in total

1.  Scale-free topology of the CA3 hippocampal network: a novel method to analyze functional neuronal assemblies.

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2.  Biological role of noise encoded in a genetic network motif.

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3.  Highly designable phenotypes and mutational buffers emerge from a systematic mapping between network topology and dynamic output.

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5.  Artefacts in statistical analyses of network motifs: general framework and application to metabolic networks.

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Review 7.  Boolean network models of cellular regulation: prospects and limitations.

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Journal:  Proc Biol Sci       Date:  2009-11-18       Impact factor: 5.349

10.  Specialized or flexible feed-forward loop motifs: a question of topology.

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