Literature DB >> 12853565

A natural class of robust networks.

Maximino Aldana1, Philippe Cluzel.   

Abstract

As biological studies shift from molecular description to system analysis we need to identify the design principles of large intracellular networks. In particular, without knowing the molecular details, we want to determine how cells reliably perform essential intracellular tasks. Recent analyses of signaling pathways and regulatory transcription networks have revealed a common network architecture, termed scale-free topology. Although the structural properties of such networks have been thoroughly studied, their dynamical properties remain largely unexplored. We present a prototype for the study of dynamical systems to predict the functional robustness of intracellular networks against variations of their internal parameters. We demonstrate that the dynamical robustness of these complex networks is a direct consequence of their scale-free topology. By contrast, networks with homogeneous random topologies require fine-tuning of their internal parameters to sustain stable dynamical activity. Considering the ubiquity of scale-free networks in nature, we hypothesize that this topology is not only the result of aggregation processes such as preferential attachment; it may also be the result of evolutionary selective processes.

Mesh:

Year:  2003        PMID: 12853565      PMCID: PMC166377          DOI: 10.1073/pnas.1536783100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

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Journal:  Exp Cell Res       Date:  2000-11-25       Impact factor: 3.905

2.  Specificity and stability in topology of protein networks.

Authors:  Sergei Maslov; Kim Sneppen
Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

3.  Complexity and fragility in ecological networks.

Authors:  R V Solé; J M Montoya
Journal:  Proc Biol Sci       Date:  2001-10-07       Impact factor: 5.349

4.  Lethality and centrality in protein networks.

Authors:  H Jeong; S P Mason; A L Barabási; Z N Oltvai
Journal:  Nature       Date:  2001-05-03       Impact factor: 49.962

5.  From topology to dynamics in biochemical networks.

Authors:  Jeffrey J. Fox; Colin C. Hill
Journal:  Chaos       Date:  2001-12       Impact factor: 3.642

6.  Hierarchical organization of modularity in metabolic networks.

Authors:  E Ravasz; A L Somera; D A Mongru; Z N Oltvai; A L Barabási
Journal:  Science       Date:  2002-08-30       Impact factor: 47.728

7.  Robustness in bacterial chemotaxis.

Authors:  U Alon; M G Surette; N Barkai; S Leibler
Journal:  Nature       Date:  1999-01-14       Impact factor: 49.962

8.  Robustness in simple biochemical networks.

Authors:  N Barkai; S Leibler
Journal:  Nature       Date:  1997-06-26       Impact factor: 49.962

9.  The small world of human language.

Authors:  R Ferrer I Cancho; R V Solé
Journal:  Proc Biol Sci       Date:  2001-11-07       Impact factor: 5.349

10.  Robustness of the BMP morphogen gradient in Drosophila embryonic patterning.

Authors:  Avigdor Eldar; Ruslan Dorfman; Daniel Weiss; Hilary Ashe; Ben-Zion Shilo; Naama Barkai
Journal:  Nature       Date:  2002-09-19       Impact factor: 49.962

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  45 in total

1.  Activities and sensitivities in boolean network models.

Authors:  Ilya Shmulevich; Stuart A Kauffman
Journal:  Phys Rev Lett       Date:  2004-07-22       Impact factor: 9.161

2.  Robustness versus evolvability: a paradigm revisited.

Authors:  Erich Bornberg-Bauer; Linus Kramer
Journal:  HFSP J       Date:  2010-05-07

3.  Discrete dynamics of contagious social diseases: Example of obesity.

Authors:  J Demongeot; O Hansen; C Taramasco
Journal:  Virulence       Date:  2015-09-16       Impact factor: 5.882

4.  Genetic networks with canalyzing Boolean rules are always stable.

Authors:  Stuart Kauffman; Carsten Peterson; Björn Samuelsson; Carl Troein
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-30       Impact factor: 11.205

5.  Eukaryotic cells are dynamically ordered or critical but not chaotic.

Authors:  Ilya Shmulevich; Stuart A Kauffman; Maximino Aldana
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-09       Impact factor: 11.205

6.  Topology of biological networks and reliability of information processing.

Authors:  Konstantin Klemm; Stefan Bornholdt
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-08       Impact factor: 11.205

Review 7.  A scale-free systems theory of motivation and addiction.

Authors:  R Andrew Chambers; Warren K Bickel; Marc N Potenza
Journal:  Neurosci Biobehav Rev       Date:  2007-05-03       Impact factor: 8.989

8.  A gene regulatory network model for cell-fate determination during Arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles.

Authors:  Carlos Espinosa-Soto; Pablo Padilla-Longoria; Elena R Alvarez-Buylla
Journal:  Plant Cell       Date:  2004-10-14       Impact factor: 11.277

9.  Structural properties of the MAPK pathway topologies in PC12 cells.

Authors:  Elisa Franco; Franco Blanchini
Journal:  J Math Biol       Date:  2012-10-25       Impact factor: 2.259

10.  From Physics to Pharmacology?

Authors:  Richard J Allen; Timothy C Elston
Journal:  Rep Prog Phys       Date:  2011-01
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