Literature DB >> 16263268

Recent structural insights into the expanding world of carbohydrate-active enzymes.

Gideon J Davies1, Tracey M Gloster, Bernard Henrissat.   

Abstract

Enzymes that catalyse the synthesis and breakdown of glycosidic bonds account for 1-3% of the proteins encoded by the genomes of most organisms. At the current rate, over 12 000 glycosyltransferase and glycoside hydrolase open reading frames will appear during 2006. Recent advances in the study of the structure and mechanism of these carbohydrate-active enzymes reveal that glycoside hydrolases continue to display a wide variety of scaffolds, whereas nucleotide-sugar-dependent glycosyltransferases tend to be grafted onto just two protein folds. The past two years have seen significant advances, including the discovery of a novel NAD+-dependent glycosidase mechanism, the dissection of the reaction coordinate of sialidases and a better understanding of the expanding roles of auxiliary carbohydrate-binding domains.

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Year:  2005        PMID: 16263268     DOI: 10.1016/j.sbi.2005.10.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  75 in total

1.  Small molecules containing hetero-bicyclic ring systems compete with UDP-Glc for binding to WaaG glycosyltransferase.

Authors:  Jens Landström; Karina Persson; Christoph Rademacher; Magnus Lundborg; Warren Wakarchuk; Thomas Peters; Göran Widmalm
Journal:  Glycoconj J       Date:  2012-06-19       Impact factor: 2.916

2.  The XTH gene family: an update on enzyme structure, function, and phylogeny in xyloglucan remodeling.

Authors:  Jens M Eklöf; Harry Brumer
Journal:  Plant Physiol       Date:  2010-04-26       Impact factor: 8.340

Review 3.  The biochemistry and structural biology of plant cell wall deconstruction.

Authors:  Harry J Gilbert
Journal:  Plant Physiol       Date:  2010-04-20       Impact factor: 8.340

Review 4.  Repair of 8-oxoG:A mismatches by the MUTYH glycosylase: Mechanism, metals and medicine.

Authors:  Douglas M Banda; Nicole N Nuñez; Michael A Burnside; Katie M Bradshaw; Sheila S David
Journal:  Free Radic Biol Med       Date:  2017-01-10       Impact factor: 7.376

5.  Costs and benefits of processivity in enzymatic degradation of recalcitrant polysaccharides.

Authors:  Svein J Horn; Pawel Sikorski; Jannicke B Cederkvist; Gustav Vaaje-Kolstad; Morten Sørlie; Bjørnar Synstad; Gert Vriend; Kjell M Vårum; Vincent G H Eijsink
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-20       Impact factor: 11.205

6.  Crystallization and preliminary crystallographic analysis of the family GH78 alpha-L-rhamnosidase RhaB from Bacillus sp. GL1.

Authors:  Zhongli Cui; Yukie Maruyama; Bunzo Mikami; Wataru Hashimoto; Kousaku Murata
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-06-10

7.  Enzyme-microbe synergy during cellulose hydrolysis by Clostridium thermocellum.

Authors:  Yanpin Lu; Yi-Heng Percival Zhang; Lee R Lynd
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

8.  Structural modeling of glucanase-substrate complexes suggests a conserved tyrosine is involved in carbohydrate recognition in plant 1,3-1,4-beta-D-glucanases.

Authors:  Li-Chu Tsai; Yi-Ning Chen; Lie-Fen Shyur
Journal:  J Comput Aided Mol Des       Date:  2008-07-29       Impact factor: 3.686

9.  Glycosylated linkers in multimodular lignocellulose-degrading enzymes dynamically bind to cellulose.

Authors:  Christina M Payne; Michael G Resch; Liqun Chen; Michael F Crowley; Michael E Himmel; Larry E Taylor; Mats Sandgren; Jerry Ståhlberg; Ingeborg Stals; Zhongping Tan; Gregg T Beckham
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-19       Impact factor: 11.205

10.  Distinguishing the differences in β-glycosylceramidase folds, dynamics, and actions informs therapeutic uses.

Authors:  Fredj Ben Bdira; Marta Artola; Herman S Overkleeft; Marcellus Ubbink; Johannes M F G Aerts
Journal:  J Lipid Res       Date:  2018-10-02       Impact factor: 5.922

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