Literature DB >> 16260733

A persistent pesticide residue and the unusual catalytic proficiency of a dehalogenating enzyme.

Christopher M Horvat1, Richard V Wolfenden.   

Abstract

The soil of potato fields in The Netherlands harbors bacteria with the ability to metabolize 3-chloroacrylic acid, generated by the degradation of a pesticide (1,3-dichloropropene) that entered the environment in 1946. From examination of rate constants at elevated temperatures, we infer that the half-time at 25 degrees C for spontaneous hydrolytic dechlorination of trans-3-chloroacrylic acid is 10,000 years, several orders of magnitude longer than half-times for spontaneous decomposition of other environmental pollutants such as 1,2-dichloroethane (72 years), paraoxon (13 months), atrazine (5 months), and aziridine (52 h). With thermodynamic parameters for activation similar to those for the spontaneous hydration of fumarate at pH 6.8, this slow reaction proceeds at a constant rate through the pH range between 2 and 12. However, at the active site of the enzyme 3-chloroacrylate dehalogenase (CaaD), isolated from a pseudomonad growing in these soils, hydrolytic dechlorination proceeds with a half-time of 0.18 s. Neither k(cat) nor k(cat)/K(m) is reduced by increasing solvent viscosity with trehalose, implying that the rate of enzymatic dechlorination is controlled by chemical events in catalysis rather than by diffusion-limited substrate binding or product release. CaaD achieves an approximately 10(12)-fold rate enhancement, matching or surpassing the rate enhancements produced by many enzymes that act on more conventional biological substrates. One of those enzymes is 4-oxalocrotonate tautomerase, with which CaaD seems to share a common evolutionary origin.

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Year:  2005        PMID: 16260733      PMCID: PMC1283461          DOI: 10.1073/pnas.0508176102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

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Authors:  M J Snider; S Gaunitz; C Ridgway; S A Short; R Wolfenden
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3.  Hydrolysis kinetics of atrazine and influence factors.

Authors:  Z F Lei; C M Ye; X J Wang
Journal:  J Environ Sci (China)       Date:  2001-01       Impact factor: 5.565

4.  Argenine decarboxylase from Escherichia coli. I. Purification and specificity for substrates and coenzyme.

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5.  The burden borne by urease.

Authors:  Brian P Callahan; Yang Yuan; Richard Wolfenden
Journal:  J Am Chem Soc       Date:  2005-08-10       Impact factor: 15.419

6.  The rate of hydrolysis of phosphomonoester dianions and the exceptional catalytic proficiencies of protein and inositol phosphatases.

Authors:  Chetan Lad; Nicholas H Williams; Richard Wolfenden
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-29       Impact factor: 11.205

7.  Reactions of trans-3-chloroacrylic acid dehalogenase with acetylene substrates: consequences of and evidence for a hydration reaction.

Authors:  Susan C Wang; Maria D Person; William H Johnson; Christian P Whitman
Journal:  Biochemistry       Date:  2003-07-29       Impact factor: 3.162

Review 8.  The 4-oxalocrotonate tautomerase family of enzymes: how nature makes new enzymes using a beta-alpha-beta structural motif.

Authors:  Christian P Whitman
Journal:  Arch Biochem Biophys       Date:  2002-06-01       Impact factor: 4.013

9.  The X-ray structure of trans-3-chloroacrylic acid dehalogenase reveals a novel hydration mechanism in the tautomerase superfamily.

Authors:  René M de Jong; Wim Brugman; Gerrit J Poelarends; Christian P Whitman; Bauke W Dijkstra
Journal:  J Biol Chem       Date:  2003-12-29       Impact factor: 5.157

10.  The roles of active-site residues in the catalytic mechanism of trans-3-chloroacrylic acid dehalogenase: a kinetic, NMR, and mutational analysis.

Authors:  Hugo F Azurmendi; Susan C Wang; Michael A Massiah; Gerrit J Poelarends; Christian P Whitman; Albert S Mildvan
Journal:  Biochemistry       Date:  2004-04-13       Impact factor: 3.162

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  11 in total

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Authors:  Randy B Stockbridge; Charles A Lewis; Yang Yuan; Richard Wolfenden
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-01       Impact factor: 11.205

2.  Evolution of enzymatic activity in the tautomerase superfamily: mechanistic and structural consequences of the L8R mutation in 4-oxalocrotonate tautomerase.

Authors:  Gerrit J Poelarends; Jeffrey J Almrud; Hector Serrano; Joseph E Darty; William H Johnson; Marvin L Hackert; Christian P Whitman
Journal:  Biochemistry       Date:  2006-06-27       Impact factor: 3.162

3.  Resolution of the uncertainty in the kinetic mechanism for the trans-3-Chloroacrylic acid dehalogenase-catalyzed reaction.

Authors:  Jamison P Huddleston; Susan C Wang; Kenneth A Johnson; Christian P Whitman
Journal:  Arch Biochem Biophys       Date:  2017-05-10       Impact factor: 4.013

4.  Phenylpyruvate tautomerase activity of trans-3-chloroacrylic acid dehalogenase: evidence for an enol intermediate in the dehalogenase reaction?

Authors:  Gerrit J Poelarends; William H Johnson; Hector Serrano; Christian P Whitman
Journal:  Biochemistry       Date:  2007-07-28       Impact factor: 3.162

Review 5.  Identification and characterization of new family members in the tautomerase superfamily: analysis and implications.

Authors:  Jamison P Huddleston; Elizabeth A Burks; Christian P Whitman
Journal:  Arch Biochem Biophys       Date:  2014-09-16       Impact factor: 4.013

6.  Compartmentalization of the Carbaryl Degradation Pathway: Molecular Characterization of Inducible Periplasmic Carbaryl Hydrolase from Pseudomonas spp.

Authors:  Dasvit Shetty; Vikas D Trivedi; Madhushri Varunjikar; Prashant S Phale
Journal:  Appl Environ Microbiol       Date:  2018-01-02       Impact factor: 4.792

7.  A pre-steady state kinetic analysis of the αY60W mutant of trans-3-chloroacrylic acid dehalogenase: implications for the mechanism of the wild-type enzyme.

Authors:  Jamison P Huddleston; Gottfried K Schroeder; Kenneth A Johnson; Christian P Whitman
Journal:  Biochemistry       Date:  2012-11-08       Impact factor: 3.162

8.  Reaction mechanism of cis-3-chloroacrylic acid dehalogenase: a theoretical study.

Authors:  Robin Sevastik; Christian P Whitman; Fahmi Himo
Journal:  Biochemistry       Date:  2009-10-13       Impact factor: 3.162

9.  The evolution of new enzyme function: lessons from xenobiotic metabolizing bacteria versus insecticide-resistant insects.

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10.  Characterization of Cg10062 from Corynebacterium glutamicum: implications for the evolution of cis-3-chloroacrylic acid dehalogenase activity in the tautomerase superfamily.

Authors:  Gerrit J Poelarends; Hector Serrano; Maria D Person; William H Johnson; Christian P Whitman
Journal:  Biochemistry       Date:  2008-07-04       Impact factor: 3.162

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