Literature DB >> 16076178

The burden borne by urease.

Brian P Callahan1, Yang Yuan, Richard Wolfenden.   

Abstract

At the active site of urease, urea undergoes nucleophilic attack by water, whereas urea decomposes in solution by elimination of ammonia so that its rate of spontaneous hydrolysis is unknown. Quantum mechanical simulations have been interpreted as indicating that urea hydrolysis is extremely slow, compared with other biological reactions proceeding spontaneously, and that urease surpasses all other enzymes in its power to enhance the rate of a reaction. We tested that possibility experimentally by examining the hydrolysis of 1,1,3,3-tetramethylurea, from which elimination cannot occur. In neutral solution at 25 degrees C, the rate constant for the uncatalyzed hydrolysis of tetramethylurea is 4.2 x 10-12 s-1, which does not differ greatly from the rate constants observed for the uncatalyzed hydrolysis of acetamide (5.1 x 10-11 s-1) or N,N-dimethylacetamide (1.8 x 10-11 s-1) under the same conditions. We estimate that the proficiency of urease as a catalyst, (kcat/Km)/knon, is 8 x 1017 M-1, slightly higher than the values for other metalloenzymes (carboxypeptidase b and cytidine deaminase) that catalyze the hydrolysis of similar bonds.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16076178     DOI: 10.1021/ja0525399

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  30 in total

1.  Impact of temperature on the time required for the establishment of primordial biochemistry, and for the evolution of enzymes.

Authors:  Randy B Stockbridge; Charles A Lewis; Yang Yuan; Richard Wolfenden
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-01       Impact factor: 11.205

2.  A persistent pesticide residue and the unusual catalytic proficiency of a dehalogenating enzyme.

Authors:  Christopher M Horvat; Richard V Wolfenden
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-31       Impact factor: 11.205

3.  Why urea eliminates ammonia rather than hydrolyzes in aqueous solution.

Authors:  Anastassia N Alexandrova; William L Jorgensen
Journal:  J Phys Chem B       Date:  2007-02-01       Impact factor: 2.991

4.  Crystallographic and X-ray absorption spectroscopic characterization of Helicobacter pylori UreE bound to Ni²⁺ and Zn²⁺ reveals a role for the disordered C-terminal arm in metal trafficking.

Authors:  Katarzyna Banaszak; Vlad Martin-Diaconescu; Matteo Bellucci; Barbara Zambelli; Wojciech Rypniewski; Michael J Maroney; Stefano Ciurli
Journal:  Biochem J       Date:  2012-02-01       Impact factor: 3.857

5.  Selectivity of Ni(II) and Zn(II) binding to Sporosarcina pasteurii UreE, a metallochaperone in the urease assembly: a calorimetric and crystallographic study.

Authors:  Barbara Zambelli; Katarzyna Banaszak; Anna Merloni; Agnieszka Kiliszek; Wojciech Rypniewski; Stefano Ciurli
Journal:  J Biol Inorg Chem       Date:  2013-10-15       Impact factor: 3.358

6.  Intrinsic disorder and metal binding in UreG proteins from Archae hyperthermophiles: GTPase enzymes involved in the activation of Ni(II) dependent urease.

Authors:  Manfredi Miraula; Stefano Ciurli; Barbara Zambelli
Journal:  J Biol Inorg Chem       Date:  2015-04-07       Impact factor: 3.358

7.  Catalyzed decomposition of urea. Molecular dynamics simulations of the binding of urea to urease.

Authors:  Guillermina Estiu; Kenneth M Merz
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162

8.  Reaction pathways and free energy profiles for spontaneous hydrolysis of urea and tetramethylurea: unexpected substituent effects.

Authors:  Min Yao; Wenlong Tu; Xi Chen; Chang-Guo Zhan
Journal:  Org Biomol Chem       Date:  2013-11-21       Impact factor: 3.876

9.  A heavy-atom isotope effect and kinetic investigation of the hydrolysis of semicarbazide by urease from jack bean (Canavalia ensiformis).

Authors:  John F Marlier; Emily J Fogle; W W Cleland
Journal:  Biochemistry       Date:  2008-09-26       Impact factor: 3.162

10.  Synthesis of terpenoid oxo derivatives with antiureolytic activity.

Authors:  Agata Kozioł; Katarzyna Macegoniuk; Ewa Grela; Agnieszka Grabowiecka; Monika Biernat; Stanisław Lochyński
Journal:  Mol Biol Rep       Date:  2018-10-22       Impact factor: 2.316

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.