Literature DB >> 17661448

Phenylpyruvate tautomerase activity of trans-3-chloroacrylic acid dehalogenase: evidence for an enol intermediate in the dehalogenase reaction?

Gerrit J Poelarends1, William H Johnson, Hector Serrano, Christian P Whitman.   

Abstract

The enzymatic conversion of cis- or trans-3-chloroacrylic acid to malonate semialdehyde is a key step in the bacterial degradation of the nematocide 1,3-dichloropropene. Two mechanisms have been proposed for the isomer-specific hydrolytic dehalogenases, cis- and trans-3-chloroacrylic acid dehalogenase (cis-CaaD and CaaD, respectively), responsible for this step. In one mechanism, the enol isomer of malonate semialdehyde is produced by the alpha,beta-elimination of HCl from an initial halohydrin species. Phenylenolpyruvate has now been found to be a substrate for CaaD with a kcat/Km value that approaches the one determined for the CaaD reaction using trans-3-chloroacrylate. Moreover, the reaction is stereoselective, generating the 3S isomer of [3-2H]phenylpyruvate in a 1.8:1 ratio in 2H2O. These two observations and a kinetic analysis of active site mutants of CaaD suggest that the active site of CaaD is responsible for the phenylpyruvate tautomerase (PPT) activity. The activity is a striking example of catalytic promiscuity and could reflect the presence of an enol intermediate in CaaD-mediated dehalogenation of trans-3-chloroacrylate. CaaD and cis-CaaD represent different families in the tautomerase superfamily, a group of structurally homologous proteins characterized by a core beta-alpha-beta building block and a catalytic Pro-1. The eukaryotic immunoregulatory protein known as macrophage migration inhibitory factor (MIF), also a tautomerase superfamily member, exhibits a PPT activity, but the biological relevance is unknown. In addition to the mechanistic implications, these results establish a functional link between CaaD and the superfamily tautomerases, highlight the catalytic and binding promiscuity of the beta-alpha-beta scaffold, and suggest that the PPT activity of MIF could reflect a partial reaction in an unknown MIF-catalyzed reaction.

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Year:  2007        PMID: 17661448      PMCID: PMC2531067          DOI: 10.1021/bi7007189

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  44 in total

Review 1.  Enzymes with extra talents: moonlighting functions and catalytic promiscuity.

Authors:  Shelley D Copley
Journal:  Curr Opin Chem Biol       Date:  2003-04       Impact factor: 8.822

2.  Crystal structures of native and inactivated cis-3-chloroacrylic acid dehalogenase. Structural basis for substrate specificity and inactivation by (R)-oxirane-2-carboxylate.

Authors:  René M de Jong; Paola Bazzacco; Gerrit J Poelarends; William H Johnson; Yoon Jae Kim; Elizabeth A Burks; Hector Serrano; Andy-Mark W H Thunnissen; Christian P Whitman; Bauke W Dijkstra
Journal:  J Biol Chem       Date:  2006-11-22       Impact factor: 5.157

3.  Cloning, expression, and characterization of a cis-3-chloroacrylic acid dehalogenase: insights into the mechanistic, structural, and evolutionary relationship between isomer-specific 3-chloroacrylic acid dehalogenases.

Authors:  Gerrit J Poelarends; Hector Serrano; Maria D Person; William H Johnson; Alexey G Murzin; Christian P Whitman
Journal:  Biochemistry       Date:  2004-01-27       Impact factor: 3.162

4.  Reactions of 4-oxalocrotonate tautomerase and YwhB with 3-halopropiolates: analysis and implications.

Authors:  Susan C Wang; William H Johnson; Robert M Czerwinski; Christian P Whitman
Journal:  Biochemistry       Date:  2004-01-27       Impact factor: 3.162

5.  Reactions of trans-3-chloroacrylic acid dehalogenase with acetylene substrates: consequences of and evidence for a hydration reaction.

Authors:  Susan C Wang; Maria D Person; William H Johnson; Christian P Whitman
Journal:  Biochemistry       Date:  2003-07-29       Impact factor: 3.162

Review 6.  The 4-oxalocrotonate tautomerase family of enzymes: how nature makes new enzymes using a beta-alpha-beta structural motif.

Authors:  Christian P Whitman
Journal:  Arch Biochem Biophys       Date:  2002-06-01       Impact factor: 4.013

7.  The X-ray structure of trans-3-chloroacrylic acid dehalogenase reveals a novel hydration mechanism in the tautomerase superfamily.

Authors:  René M de Jong; Wim Brugman; Gerrit J Poelarends; Christian P Whitman; Bauke W Dijkstra
Journal:  J Biol Chem       Date:  2003-12-29       Impact factor: 5.157

8.  The roles of active-site residues in the catalytic mechanism of trans-3-chloroacrylic acid dehalogenase: a kinetic, NMR, and mutational analysis.

Authors:  Hugo F Azurmendi; Susan C Wang; Michael A Massiah; Gerrit J Poelarends; Christian P Whitman; Albert S Mildvan
Journal:  Biochemistry       Date:  2004-04-13       Impact factor: 3.162

9.  The 4-oxalocrotonate tautomerase- and YwhB-catalyzed hydration of 3E-haloacrylates: implications for the evolution of new enzymatic activities.

Authors:  Susan C Wang; William H Johnson; Christian P Whitman
Journal:  J Am Chem Soc       Date:  2003-11-26       Impact factor: 15.419

10.  MIF signal transduction initiated by binding to CD74.

Authors:  Lin Leng; Christine N Metz; Yan Fang; Jing Xu; Seamas Donnelly; John Baugh; Thomas Delohery; Yibang Chen; Robert A Mitchell; Richard Bucala
Journal:  J Exp Med       Date:  2003-06-02       Impact factor: 14.307

View more
  10 in total

1.  A mutational analysis of active site residues in trans-3-chloroacrylic acid dehalogenase.

Authors:  Gerrit J Poelarends; Hector Serrano; Jamison P Huddleston; William H Johnson; Christian P Whitman
Journal:  FEBS Lett       Date:  2013-07-10       Impact factor: 4.124

2.  Kinetic and structural characterization of DmpI from Helicobacter pylori and Archaeoglobus fulgidus, two 4-oxalocrotonate tautomerase family members.

Authors:  Jeffrey J Almrud; Rakhi Dasgupta; Robert M Czerwinski; Andrew D Kern; Marvin L Hackert; Christian P Whitman
Journal:  Bioorg Chem       Date:  2010-07-18       Impact factor: 5.275

3.  Kinetic and structural characterization of a cis-3-Chloroacrylic acid dehalogenase homologue in Pseudomonas sp. UW4: A potential step between subgroups in the tautomerase superfamily.

Authors:  Jake A LeVieux; Bert-Jan Baas; Tamer S Kaoud; Rebecca Davidson; Patricia C Babbitt; Yan Jessie Zhang; Christian P Whitman
Journal:  Arch Biochem Biophys       Date:  2017-10-27       Impact factor: 4.013

Review 4.  The chemical versatility of the beta-alpha-beta fold: catalytic promiscuity and divergent evolution in the tautomerase superfamily.

Authors:  G J Poelarends; V Puthan Veetil; C P Whitman
Journal:  Cell Mol Life Sci       Date:  2008-11       Impact factor: 9.261

5.  Pre-steady-state kinetic analysis of cis-3-chloroacrylic acid dehalogenase: analysis and implications.

Authors:  Brooklyn A Robertson; Gottfried K Schroeder; Zhinan Jin; Kenneth A Johnson; Christian P Whitman
Journal:  Biochemistry       Date:  2009-12-15       Impact factor: 3.162

6.  A pre-steady state kinetic analysis of the αY60W mutant of trans-3-chloroacrylic acid dehalogenase: implications for the mechanism of the wild-type enzyme.

Authors:  Jamison P Huddleston; Gottfried K Schroeder; Kenneth A Johnson; Christian P Whitman
Journal:  Biochemistry       Date:  2012-11-08       Impact factor: 3.162

7.  Reaction mechanism of cis-3-chloroacrylic acid dehalogenase: a theoretical study.

Authors:  Robin Sevastik; Christian P Whitman; Fahmi Himo
Journal:  Biochemistry       Date:  2009-10-13       Impact factor: 3.162

8.  A global view of structure-function relationships in the tautomerase superfamily.

Authors:  Rebecca Davidson; Bert-Jan Baas; Eyal Akiva; Gemma L Holliday; Benjamin J Polacco; Jake A LeVieux; Collin R Pullara; Yan Jessie Zhang; Christian P Whitman; Patricia C Babbitt
Journal:  J Biol Chem       Date:  2017-11-28       Impact factor: 5.157

9.  Characterization of Cg10062 from Corynebacterium glutamicum: implications for the evolution of cis-3-chloroacrylic acid dehalogenase activity in the tautomerase superfamily.

Authors:  Gerrit J Poelarends; Hector Serrano; Maria D Person; William H Johnson; Christian P Whitman
Journal:  Biochemistry       Date:  2008-07-04       Impact factor: 3.162

10.  Demethionylation of Pro-1 variants of 4-oxalocrotonate tautomerase in Escherichia coli by co-expression with an engineered methionine aminopeptidase.

Authors:  Bert-Jan Baas; Ellen Zandvoort; Anna A Wasiel; Gerrit J Poelarends
Journal:  FEBS Open Bio       Date:  2014-07-09       Impact factor: 2.693

  10 in total

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