Literature DB >> 16260588

Effect of fixation to the degradation of nuclear and mitochondrial DNA in different tissues.

Franziska Miething1, Sandra Hering, Bärbel Hanschke, Jan Dressler.   

Abstract

Samples of different tissues were preserved in seven fixatives for periods of time extending from 1 to 336 days, to determine which fixatives reduce the time-dependent degradation of DNA and preserve the histological structure. To achieve these results, three PCR systems were used: FGA and TC11 (both for nuclear DNA) and HV1 for mitochondrial DNA (mt-DNA). For long-term storage in combination with amplification of nuclear and mt-DNA, consistent results were obtained in Carnoy's solution and glutaraldehyde. Variable results were observed for buffered formalin; an mt-DNA product could be detected even after 3 months of fixation. In regard to comparison of the different tissues, the quantities recovered from skeletal muscles and kidneys were higher than from other tissues.

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Year:  2005        PMID: 16260588     DOI: 10.1369/jhc.5B6726.2005

Source DB:  PubMed          Journal:  J Histochem Cytochem        ISSN: 0022-1554            Impact factor:   2.479


  22 in total

1.  High quality DNA obtained with an automated DNA extraction method with 70+ year old formalin-fixed celloidin-embedded (FFCE) blocks from the indiana medical history museum.

Authors:  Erin E Niland; Audrey McGuire; Mary H Cox; George E Sandusky
Journal:  Am J Transl Res       Date:  2012-04-10       Impact factor: 4.060

2.  Quantification of DNA Extracted from Formalin Fixed Paraffin-Embeded Tissue Comparison of Three Techniques: Effect on PCR Efficiency.

Authors:  Dushyant Kumar; Manoj Kumar Panigrahi; Moushumi Suryavanshi; Anurag Mehta; Kandarpa Kumar Saikia
Journal:  J Clin Diagn Res       Date:  2016-09-01

3.  Biospecimen reporting for improved study quality (BRISQ).

Authors:  Helen M Moore; Andrea B Kelly; Scott D Jewell; Lisa M McShane; Douglas P Clark; Renata Greenspan; Daniel F Hayes; Pierre Hainaut; Paula Kim; Elizabeth Mansfield; Olga Potapova; Peter Riegman; Yaffa Rubinstein; Edward Seijo; Stella Somiari; Peter Watson; Heinz-Ulrich Weier; Claire Zhu; Jim Vaught
Journal:  J Proteome Res       Date:  2011-06-21       Impact factor: 4.466

4.  Tumoural specimens for forensic purposes: comparison of genetic alterations in frozen and formalin-fixed paraffin-embedded tissues.

Authors:  Viviana Ananian; Pamela Tozzo; Elena Ponzano; Donato Nitti; Daniele Rodriguez; Luciana Caenazzo
Journal:  Int J Legal Med       Date:  2010-04-06       Impact factor: 2.686

5.  Bacterial Genotyping of Central Nervous System Tuberculosis in South Africa: Heterogenic Mycobacterium tuberculosis Infection and Predominance of Lineage 4.

Authors:  L M van Leeuwen; P Versteegen; S D Zaharie; S L van Elsland; A Jordaan; E M Streicher; R M Warren; M van der Kuip; A M van Furth
Journal:  J Clin Microbiol       Date:  2019-07-26       Impact factor: 5.948

6.  Coextraction and PCR Based Analysis of Nucleic Acids From Formalin-Fixed Paraffin-Embedded Specimens.

Authors:  Souvik Ghatak; Zothan Sanga; Jeremy L Pautu; Nachimuthu Senthil Kumar
Journal:  J Clin Lab Anal       Date:  2014-10-02       Impact factor: 2.352

7.  Biospecimen Reporting for Improved Study Quality.

Authors:  Helen M Moore; Andrea Kelly; Scott D Jewell; Lisa M McShane; Douglas P Clark; Renata Greenspan; Pierre Hainaut; Daniel F Hayes; Paula Kim; Elizabeth Mansfield; Olga Potapova; Peter Riegman; Yaffa Rubinstein; Edward Seijo; Stella Somiari; Peter Watson; Heinz-Ulrich Weier; Claire Zhu; Jim Vaught
Journal:  Biopreserv Biobank       Date:  2011-04       Impact factor: 2.300

8.  Growth requirements and chromosomal instability of induced pluripotent stem cells generated from adult canine fibroblasts.

Authors:  Sehwon Koh; Rachael Thomas; Shengdar Tsai; Steve Bischoff; Ji-Hey Lim; Matthew Breen; Natasha J Olby; Jorge A Piedrahita
Journal:  Stem Cells Dev       Date:  2012-11-28       Impact factor: 3.272

9.  The use of museum specimens with high-throughput DNA sequencers.

Authors:  Andrew S Burrell; Todd R Disotell; Christina M Bergey
Journal:  J Hum Evol       Date:  2014-12-18       Impact factor: 3.895

10.  Evaluating the Feasibility of DNA Methylation Analyses Using Long-Term Archived Brain Formalin-Fixed Paraffin-Embedded Samples.

Authors:  Stine T Bak; Nicklas H Staunstrup; Anna Starnawska; Tina F Daugaard; Jens R Nyengaard; Mette Nyegaard; Anders Børglum; Ole Mors; Karl-Anton Dorph-Petersen; Anders L Nielsen
Journal:  Mol Neurobiol       Date:  2016-12-19       Impact factor: 5.590

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