Literature DB >> 16252121

Degenerate coding in neural systems.

Anthony Leonardo1.   

Abstract

When the dimensionality of a neural circuit is substantially larger than the dimensionality of the variable it encodes, many different degenerate network states can produce the same output. In this review I will discuss three different neural systems that are linked by this theme. The pyloric network of the lobster, the song control system of the zebra finch, and the odor encoding system of the locust, while different in design, all contain degeneracies between their internal parameters and the outputs they encode. Indeed, although the dynamics of song generation and odor identification are quite different, computationally, odor recognition can be thought of as running the song generation circuitry backwards. In both of these systems, degeneracy plays a vital role in mapping a sparse neural representation devoid of correlations onto external stimuli (odors or song structure) that are strongly correlated. I argue that degeneracy between input and output states is an inherent feature of many neural systems, which can be exploited as a fault-tolerant method of reliably learning, generating, and discriminating closely related patterns.

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Mesh:

Year:  2005        PMID: 16252121     DOI: 10.1007/s00359-005-0026-0

Source DB:  PubMed          Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol        ISSN: 0340-7594            Impact factor:   1.836


  70 in total

1.  Decrystallization of adult birdsong by perturbation of auditory feedback.

Authors:  A Leonardo; M Konishi
Journal:  Nature       Date:  1999-06-03       Impact factor: 49.962

2.  Learning the parts of objects by non-negative matrix factorization.

Authors:  D D Lee; H S Seung
Journal:  Nature       Date:  1999-10-21       Impact factor: 49.962

3.  Measures of degeneracy and redundancy in biological networks.

Authors:  G Tononi; O Sporns; G M Edelman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

Review 4.  Degeneracy and complexity in biological systems.

Authors:  G M Edelman; J A Gally
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-06       Impact factor: 11.205

5.  Temporal sparseness of the premotor drive is important for rapid learning in a neural network model of birdsong.

Authors:  Ila R Fiete; Richard H R Hahnloser; Michale S Fee; H Sebastian Seung
Journal:  J Neurophysiol       Date:  2004-04-07       Impact factor: 2.714

6.  Intensity versus identity coding in an olfactory system.

Authors:  Mark Stopfer; Vivek Jayaraman; Gilles Laurent
Journal:  Neuron       Date:  2003-09-11       Impact factor: 17.173

7.  Role of syringeal muscles in controlling the phonology of bird song.

Authors:  F Goller; R A Suthers
Journal:  J Neurophysiol       Date:  1996-07       Impact factor: 2.714

8.  Distinct mechanisms for synchronization and temporal patterning of odor-encoding neural assemblies.

Authors:  K MacLeod; G Laurent
Journal:  Science       Date:  1996-11-08       Impact factor: 47.728

9.  Odour encoding by temporal sequences of firing in oscillating neural assemblies.

Authors:  M Wehr; G Laurent
Journal:  Nature       Date:  1996-11-14       Impact factor: 49.962

10.  Vocal experimentation in the juvenile songbird requires a basal ganglia circuit.

Authors:  Bence P Olveczky; Aaron S Andalman; Michale S Fee
Journal:  PLoS Biol       Date:  2005-03-29       Impact factor: 8.029

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  21 in total

1.  A neural data structure for novelty detection.

Authors:  Sanjoy Dasgupta; Timothy C Sheehan; Charles F Stevens; Saket Navlakha
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-03       Impact factor: 11.205

Review 2.  Neuromechanics of muscle synergies for posture and movement.

Authors:  Lena H Ting; J Lucas McKay
Journal:  Curr Opin Neurobiol       Date:  2008-03-04       Impact factor: 6.627

3.  The synaptic impact of the host immune response in a parkinsonian allograft rat model: Influence on graft-derived aberrant behaviors.

Authors:  K E Soderstrom; G Meredith; T B Freeman; S O McGuire; T J Collier; C E Sortwell; Qun Wu; K Steece-Collier
Journal:  Neurobiol Dis       Date:  2008-07-11       Impact factor: 5.996

4.  Degeneracy-driven self-structuring dynamics in selective repertoires.

Authors:  Sergei P Atamas; Jonathan Bell
Journal:  Bull Math Biol       Date:  2009-04-01       Impact factor: 1.758

Review 5.  Dimensional reduction in sensorimotor systems: a framework for understanding muscle coordination of posture.

Authors:  Lena H Ting
Journal:  Prog Brain Res       Date:  2007       Impact factor: 2.453

6.  Efficient transformation of an auditory population code in a small sensory system.

Authors:  Jan Clemens; Olaf Kutzki; Bernhard Ronacher; Susanne Schreiber; Sandra Wohlgemuth
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

7.  Testing the hypothesis of neurodegeneracy in respiratory network function with a priori transected arterially perfused brain stem preparation of rat.

Authors:  Sarah E Jones; Mathias Dutschmann
Journal:  J Neurophysiol       Date:  2016-02-17       Impact factor: 2.714

Review 8.  Network homeostasis: a matter of coordination.

Authors:  Arianna Maffei; Alfredo Fontanini
Journal:  Curr Opin Neurobiol       Date:  2009-06-18       Impact factor: 6.627

9.  Constraints on neural redundancy.

Authors:  Aaron P Batista; Byron M Yu; Steven M Chase; Jay A Hennig; Matthew D Golub; Peter J Lund; Patrick T Sadtler; Emily R Oby; Kristin M Quick; Stephen I Ryu; Elizabeth C Tyler-Kabara
Journal:  Elife       Date:  2018-08-15       Impact factor: 8.140

Review 10.  Degeneracy in hippocampal physiology and plasticity.

Authors:  Rahul K Rathour; Rishikesh Narayanan
Journal:  Hippocampus       Date:  2019-07-13       Impact factor: 3.899

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