Literature DB >> 30509984

A neural data structure for novelty detection.

Sanjoy Dasgupta1, Timothy C Sheehan2, Charles F Stevens3,4, Saket Navlakha5.   

Abstract

Novelty detection is a fundamental biological problem that organisms must solve to determine whether a given stimulus departs from those previously experienced. In computer science, this problem is solved efficiently using a data structure called a Bloom filter. We found that the fruit fly olfactory circuit evolved a variant of a Bloom filter to assess the novelty of odors. Compared with a traditional Bloom filter, the fly adjusts novelty responses based on two additional features: the similarity of an odor to previously experienced odors and the time elapsed since the odor was last experienced. We elaborate and validate a framework to predict novelty responses of fruit flies to given pairs of odors. We also translate insights from the fly circuit to develop a class of distance- and time-sensitive Bloom filters that outperform prior filters when evaluated on several biological and computational datasets. Overall, our work illuminates the algorithmic basis of an important neurobiological problem and offers strategies for novelty detection in computational systems.

Entities:  

Keywords:  Bloom filters; computer science; data structures; fly olfactory circuit; novelty detection

Mesh:

Year:  2018        PMID: 30509984      PMCID: PMC6304992          DOI: 10.1073/pnas.1814448115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

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Authors:  Charan Ranganath; Gregor Rainer
Journal:  Nat Rev Neurosci       Date:  2003-03       Impact factor: 34.870

2.  Product quantization for nearest neighbor search.

Authors:  Hervé Jégou; Matthijs Douze; Cordelia Schmid
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2011-01       Impact factor: 6.226

Review 3.  Degenerate coding in neural systems.

Authors:  Anthony Leonardo
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2005-10-27       Impact factor: 1.836

4.  Coding of odors by a receptor repertoire.

Authors:  Elissa A Hallem; John R Carlson
Journal:  Cell       Date:  2006-04-07       Impact factor: 41.582

5.  Olfactory representations by Drosophila mushroom body neurons.

Authors:  Glenn C Turner; Maxim Bazhenov; Gilles Laurent
Journal:  J Neurophysiol       Date:  2007-12-19       Impact factor: 2.714

6.  Imaging a population code for odor identity in the Drosophila mushroom body.

Authors:  Robert A A Campbell; Kyle S Honegger; Hongtao Qin; Wanhe Li; Ebru Demir; Glenn C Turner
Journal:  J Neurosci       Date:  2013-06-19       Impact factor: 6.167

7.  Divisive normalization in olfactory population codes.

Authors:  Shawn R Olsen; Vikas Bhandawat; Rachel I Wilson
Journal:  Neuron       Date:  2010-04-29       Impact factor: 17.173

8.  Dynamic sensory representations in the olfactory bulb: modulation by wakefulness and experience.

Authors:  Hiroyuki K Kato; Monica W Chu; Jeffry S Isaacson; Takaki Komiyama
Journal:  Neuron       Date:  2012-12-06       Impact factor: 17.173

9.  A unique role for the human amygdala in novelty detection.

Authors:  Jennifer Urbano Blackford; Joshua W Buckholtz; Suzanne N Avery; David H Zald
Journal:  Neuroimage       Date:  2010-01-04       Impact factor: 6.556

10.  Random convergence of olfactory inputs in the Drosophila mushroom body.

Authors:  Sophie J C Caron; Vanessa Ruta; L F Abbott; Richard Axel
Journal:  Nature       Date:  2013-04-24       Impact factor: 49.962

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  6 in total

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3.  Learning probabilistic neural representations with randomly connected circuits.

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-18       Impact factor: 11.205

Review 4.  A feedback control principle common to several biological and engineered systems.

Authors:  Jonathan Y Suen; Saket Navlakha
Journal:  J R Soc Interface       Date:  2022-03-02       Impact factor: 4.118

5.  Mosquito Olfactory Response Ensemble enables pattern discovery by curating a behavioral and electrophysiological response database.

Authors:  Abhishek Gupta; Swikriti S Singh; Aarush M Mittal; Pranjul Singh; Shefali Goyal; Karthikeyan R Kannan; Arjit K Gupta; Nitin Gupta
Journal:  iScience       Date:  2022-02-17

6.  A neural theory for counting memories.

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Journal:  Nat Commun       Date:  2022-10-10       Impact factor: 17.694

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