Literature DB >> 16234926

Cryoreduction EPR and 13C, 19F ENDOR study of substrate-bound substates and solvent kinetic isotope effects in the catalytic cycle of cytochrome P450cam and its T252A mutant.

Sun Hee Kim1, Tran-Chin Yang, Roshan Perera, Shengxi Jin, Thomas A Bryson, Masanori Sono, Roman Davydov, John H Dawson, Brian M Hoffman.   

Abstract

We recently used cryoreduction EPR/ENDOR techniques to show that a substrate can modulate the properties of both the monooxygenase active-oxygen intermediates and of the proton-delivery network which encompasses them. In the present report we use Q-band pulsed 19F ENDOR (Mims 3-pulse sequence) to examine the substrate binding geometries of camphor, through use of the 5,5'--difluorocamphor, and 13C ENDOR to examine the binding of 5-methylenyl camphor labeled with 13C at C11. These probes are examined in multiple states of the catalytic cycle of P450cam and its T252A mutant. As part of this investigation we further report a new cryoreduction reaction, the reduction of a ferroheme to the EPR-visible Fe(I) state, and use it to probe the substrate binding to the EPR-silent ferroheme state. Finally we report the solvent kinetic isotope effect on the decay of the camphor complex of the hydroperoxo-ferric intermediate, the first such measurement on an individual step within the P450cam reaction cycle. Following reduction of oxyferrous-P450cam, this step is the rate-limiting step in camphor hydroxylation, and its solv-KIE of 1.8 at 190 K establishes that it involves activation of the hydroperoxo moiety by transfer of the 'second' proton of catalysis. We suggest that the finding that the heme pocket can exist in multiple substates, including multiple substrate binding locations, even in P450cam, along with the established possibility that the hydroperoxo-ferriheme intermediate can react with substrate, may explain the formation of multiple products by P450s.

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Year:  2005        PMID: 16234926     DOI: 10.1039/b506764m

Source DB:  PubMed          Journal:  Dalton Trans        ISSN: 1477-9226            Impact factor:   4.390


  11 in total

Review 1.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

2.  Role of the Proximal Cysteine Hydrogen Bonding Interaction in Cytochrome P450 2B4 Studied by Cryoreduction, Electron Paramagnetic Resonance, and Electron-Nuclear Double Resonance Spectroscopy.

Authors:  Roman Davydov; Sangchoul Im; Muralidharan Shanmugam; William A Gunderson; Naw May Pearl; Brian M Hoffman; Lucy Waskell
Journal:  Biochemistry       Date:  2016-02-03       Impact factor: 3.162

Review 3.  Active intermediates in heme monooxygenase reactions as revealed by cryoreduction/annealing, EPR/ENDOR studies.

Authors:  Roman Davydov; Brian M Hoffman
Journal:  Arch Biochem Biophys       Date:  2010-09-18       Impact factor: 4.013

4.  Mechanism of the Clinically Relevant E305G Mutation in Human P450 CYP17A1.

Authors:  Yilin Liu; Yelena Grinkova; Michael C Gregory; Ilia G Denisov; James R Kincaid; Stephen G Sligar
Journal:  Biochemistry       Date:  2021-10-18       Impact factor: 3.162

5.  The use of deuterated camphor as a substrate in (1)H ENDOR studies of hydroxylation by cryoreduced oxy P450cam provides new evidence of the involvement of compound I.

Authors:  Roman Davydov; John H Dawson; Roshan Perera; Brian M Hoffman
Journal:  Biochemistry       Date:  2013-01-14       Impact factor: 3.162

6.  QM/MM study of the active species of the human cytochrome P450 3A4, and the influence thereof of the multiple substrate binding.

Authors:  Dan Fishelovitch; Carina Hazan; Hajime Hirao; Haim J Wolfson; Ruth Nussinov; Sason Shaik
Journal:  J Phys Chem B       Date:  2007-11-17       Impact factor: 2.991

7.  Resonance Raman characterization of the peroxo and hydroperoxo intermediates in cytochrome P450.

Authors:  Ilia G Denisov; Piotr J Mak; Thomas M Makris; Stephen G Sligar; James R Kincaid
Journal:  J Phys Chem A       Date:  2008-12-18       Impact factor: 2.781

8.  Resonance Raman spectroscopic studies of hydroperoxo derivatives of cobalt-substituted myoglobin.

Authors:  Piotr J Mak; James R Kincaid
Journal:  J Inorg Biochem       Date:  2008-07-23       Impact factor: 4.155

9.  EPR and ENDOR studies of Fe(II) hemoproteins reduced and oxidized at 77 K.

Authors:  Roman Davydov; Brian M Hoffman
Journal:  J Biol Inorg Chem       Date:  2007-12-06       Impact factor: 3.358

10.  P450 CYP17A1 Variant with a Disordered Proton Shuttle Assembly Retains Peroxo-Mediated Lyase Efficiency.

Authors:  Yilin Liu; Ilia G Denisov; Yelena V Grinkova; Stephen G Sligar; James R Kincaid
Journal:  Chemistry       Date:  2020-11-09       Impact factor: 5.236

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