Literature DB >> 18630867

Resonance Raman characterization of the peroxo and hydroperoxo intermediates in cytochrome P450.

Ilia G Denisov1, Piotr J Mak, Thomas M Makris, Stephen G Sligar, James R Kincaid.   

Abstract

Resonance Raman (RR) studies of intermediates generated by cryoreduction of the oxyferrous complex of the D251N mutant of cytochrome P450(cam) (CYP101) are reported. Owing to the fact that proton delivery to the active site is hindered in this mutant, the unprotonated peroxo-ferric intermediate is observed as the primary species after radiolytic reduction of the oxy-complex in frozen solutions at 77 K. In as much as previous EPR and ENDOR studies have shown that annealing of this species to approximately 180 K results in protonation of the distal oxygen atom to form the hydroperoxo intermediate, this system has been exploited to permit direct RR interrogation of the changes in the Fe-O and O-O bonds caused by the reduction and subsequent protonation. Our results show that the nu(O-O) mode decreases from a superoxo-like frequency near approximately 1130 cm(-1) to 792 cm(-1) upon reduction. The latter frequency, as well as its lack of sensitivity to H/D exchange, is consistent with heme-bound peroxide formulation. This species also exhibits a nu(Fe-O) mode, the 553 cm(-1) frequency of which is higher than that observed for the nonreduced oxy P450 precursor (537 cm(-1)), implying a strengthened Fe-O linkage upon reduction. Upon subsequent protonation, the resulting Fe-O-OH fragment exhibits a lowered nu(O-O) mode at 774 cm(-1), whereas the nu(Fe-O) increases to 564 cm(-1). Both modes exhibit a downshift upon H/D exchange, as expected for a hydroperoxo-ferric formulation. These experimental RR data are compared with those previously acquired for the wild-type protein, and the shifts observed upon reduction and subsequent protonation are discussed with reference to theoretical predictions.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18630867      PMCID: PMC3120136          DOI: 10.1021/jp8017875

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  46 in total

1.  Role of the heme active site and protein environment in structure, spectra, and function of the cytochrome p450s.

Authors:  G H Loew; D L Harris
Journal:  Chem Rev       Date:  2000-02-09       Impact factor: 60.622

2.  Protein side-chain motion and hydration in proton-transfer pathways. Results for cytochrome p450cam.

Authors:  Srabani Taraphder; Gerhard Hummer
Journal:  J Am Chem Soc       Date:  2003-04-02       Impact factor: 15.419

3.  Resonance Raman studies of dioxygen adducts of cobalt-substituted heme proteins and model compounds. Vibrationally coupled dioxygen and the issues of multiple structures and distal side hydrogen bonding.

Authors:  A Bruha; J R Kincaid
Journal:  J Am Chem Soc       Date:  1988-08-01       Impact factor: 15.419

4.  The final catalytic step of cytochrome p450 aromatase: a density functional theory study.

Authors:  John C Hackett; Robert W Brueggemeier; Christopher M Hadad
Journal:  J Am Chem Soc       Date:  2005-04-13       Impact factor: 15.419

Review 5.  Mechanistic enzymology of oxygen activation by the cytochromes P450.

Authors:  Thomas M Makris; Roman Davydov; Ilia G Denisov; Brian M Hoffman; Stephen G Sligar
Journal:  Drug Metab Rev       Date:  2002-11       Impact factor: 4.518

6.  Crystallographic study on the dioxygen complex of wild-type and mutant cytochrome P450cam. Implications for the dioxygen activation mechanism.

Authors:  Shingo Nagano; Thomas L Poulos
Journal:  J Biol Chem       Date:  2005-06-30       Impact factor: 5.157

7.  Substrate modulation of the properties and reactivity of the oxy-ferrous and hydroperoxo-ferric intermediates of cytochrome P450cam as shown by cryoreduction-EPR/ENDOR spectroscopy.

Authors:  Roman Davydov; Roshan Perera; Shengxi Jin; Tran-Chin Yang; Thomas A Bryson; Masanori Sono; John H Dawson; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2005-02-09       Impact factor: 15.419

8.  On the role of the axial ligand in heme proteins: a theoretical study.

Authors:  Patrik Rydberg; Emma Sigfridsson; Ulf Ryde
Journal:  J Biol Inorg Chem       Date:  2004-01-15       Impact factor: 3.358

9.  Alteration of P450 distal pocket solvent leads to impaired proton delivery and changes in heme geometry.

Authors:  Thomas M Makris; Konstanze von Koenig; Ilme Schlichting; Stephen G Sligar
Journal:  Biochemistry       Date:  2007-11-15       Impact factor: 3.162

10.  Resonance Raman studies of HOO-Co(III)bleomycin and Co(III)bleomycin: identification of two important vibrational modes, nu(Co-OOH) and nu(O-OH).

Authors:  Cynthia Rajani; James R Kincaid; David H Petering
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

View more
  35 in total

1.  Bioinorganic chemistry: Model offers intermediate insight.

Authors:  Kenneth D Karlin
Journal:  Nature       Date:  2010-01-14       Impact factor: 49.962

2.  Evidence for a ferryl intermediate in a heme-based dioxygenase.

Authors:  Ariel Lewis-Ballester; Dipanwita Batabyal; Tsuyoshi Egawa; Changyuan Lu; Yu Lin; Marcelo A Marti; Luciana Capece; Dario A Estrin; Syun-Ru Yeh
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-29       Impact factor: 11.205

Review 3.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

4.  Phenol-Induced O-O Bond Cleavage in a Low-Spin Heme-Peroxo-Copper Complex: Implications for O2 Reduction in Heme-Copper Oxidases.

Authors:  Andrew W Schaefer; Matthew T Kieber-Emmons; Suzanne M Adam; Kenneth D Karlin; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2017-06-06       Impact factor: 15.419

5.  Spin equilibrium and O₂-binding kinetics of Mycobacterium tuberculosis CYP51 with mutations in the histidine-threonine dyad.

Authors:  Gareth K Jennings; Anuja Modi; Justin E Elenewski; Caroline M Ritchie; Thuy Nguyen; Keith C Ellis; John C Hackett
Journal:  J Inorg Biochem       Date:  2014-04-12       Impact factor: 4.155

6.  Acid-catalyzed disproportionation of oxoiron(IV) porphyrins to give oxoiron(IV) porphyrin radical cations.

Authors:  Zhengzheng Pan; Martin Newcomb
Journal:  Inorg Chem Commun       Date:  2011-06-01       Impact factor: 2.495

7.  Defining CYP3A4 structural responses to substrate binding. Raman spectroscopic studies of a nanodisc-incorporated mammalian cytochrome P450.

Authors:  Piotr J Mak; Ilia G Denisov; Yelena V Grinkova; Stephen G Sligar; James R Kincaid
Journal:  J Am Chem Soc       Date:  2011-01-05       Impact factor: 15.419

8.  Using resonance Raman cross-section data to estimate the spin state populations of Cytochromes P450.

Authors:  Piotr J Mak; Qianhong Zhu; James R Kincaid
Journal:  J Raman Spectrosc       Date:  2013-12-01       Impact factor: 3.133

9.  Human Cytochrome CYP17A1: The Structural Basis for Compromised Lyase Activity with 17-Hydroxyprogesterone.

Authors:  Piotr J Mak; Ruchia Duggal; Ilia G Denisov; Michael C Gregory; Stephen G Sligar; James R Kincaid
Journal:  J Am Chem Soc       Date:  2018-06-05       Impact factor: 15.419

10.  Experimental documentation of the structural consequences of hydrogen-bonding interactions to the proximal cysteine of a cytochrome P450.

Authors:  Piotr J Mak; Yuting Yang; Sangchoul Im; Lucy A Waskell; James R Kincaid
Journal:  Angew Chem Int Ed Engl       Date:  2012-09-11       Impact factor: 15.336

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.