Literature DB >> 16231208

Catalytic activities of [GADV]-peptides. Formation and establishment of [GADV]-protein world for the emergence of life.

Takae Oba1, Jun Fukushima, Masako Maruyama, Ryoko Iwamoto, Kenji Ikehara.   

Abstract

We have previously postulated a novel hypothesis for the origin of life, assuming that life on the earth originated from "[GADV]-protein world", not from the "RNA world" (see Ikehara's review, 2002). The [GADV]-protein world is constituted from peptides and proteins with random sequences of four amino acids (glycine [G], alanine [A], aspartic acid [D] and valine [V]), which accumulated by pseudo-replication of the [GADV]-proteins. To obtain evidence for the hypothesis, we produced [GADV]-peptides by repeated heat-drying of the amino acids for 30 cycles ([GADV]-P(30)) and examined whether the peptides have some catalytic activities or not. From the results, it was found that the [GADV]-P(30) can hydrolyze several kinds of chemical bonds in molecules, such as umbelliferyl-beta-D-galactoside, glycine-p-nitroanilide and bovine serum albumin. This suggests that [GADV]-P(30) could play an important role in the accumulation of [GADV]-proteins through pseudo-replication, leading to the emergence of life. We further show that [GADV]-octapaptides with random sequences, but containing no cyclic compounds as diketepiperazines, have catalytic activity, hydrolyzing peptide bonds in a natural protein, bovine serum albumin. The catalytic activity of the octapeptides was much higher than the [GADV]-P(30) produced through repeated heat-drying treatments. These results also support the [GADV]-protein-world hypothesis of the origin of life (see Ikehara's review, 2002). Possible steps for the emergence of life on the primitive earth are presented.

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Year:  2005        PMID: 16231208     DOI: 10.1007/s11084-005-3519-5

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  17 in total

1.  A replicator was not involved in the origin of life.

Authors:  R Shapiro
Journal:  IUBMB Life       Date:  2000-03       Impact factor: 3.885

2.  A novel theory on the origin of the genetic code: a GNC-SNS hypothesis.

Authors:  Kenji Ikehara; Yoko Omori; Rieko Arai; Akiko Hirose
Journal:  J Mol Evol       Date:  2002-04       Impact factor: 2.395

3.  Synthesis of polypeptides by microwave heating I. Formation of polypeptides during repeated hydration-dehydration cycles and their characterization.

Authors:  H Yanagawa; K Kojima; M Ito; N Handa
Journal:  J Mol Evol       Date:  1990-09       Impact factor: 2.395

4.  Directed molecular evolution.

Authors:  G F Joyce
Journal:  Sci Am       Date:  1992-12       Impact factor: 2.142

5.  A possible origin of newly-born bacterial genes: significance of GC-rich nonstop frame on antisense strand.

Authors:  K Ikehara; F Amada; S Yoshida; Y Mikata; A Tanaka
Journal:  Nucleic Acids Res       Date:  1996-11-01       Impact factor: 16.971

6.  Elongation of oligopeptides in a simulated submarine hydrothermal system.

Authors:  E Imai; H Honda; K Hatori; A Brack; K Matsuno
Journal:  Science       Date:  1999-02-05       Impact factor: 47.728

7.  Unusually biased nucleotide sequences on sense strands of Flavobacterium sp. genes produce nonstop frames on the corresponding antisense strands.

Authors:  K Ikehara; E Okazawa
Journal:  Nucleic Acids Res       Date:  1993-05-11       Impact factor: 16.971

8.  Catalysis of dialanine formation by glycine in the salt-induced peptide formation reaction.

Authors:  Y Suwannachot; B M Rode
Journal:  Orig Life Evol Biosph       Date:  1998-02       Impact factor: 1.950

9.  Prebiotic synthesis of amino acids from formaldehyde and hydroxylamine in a modified sea medium.

Authors:  M Sakurai; H Yanagawa
Journal:  Orig Life       Date:  1984

10.  Prebiotic ribose synthesis: a critical analysis.

Authors:  R Shapiro
Journal:  Orig Life Evol Biosph       Date:  1988       Impact factor: 1.950

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  13 in total

1.  A self-referential model for the formation of the genetic code.

Authors:  Romeu Cardoso Guimarães; Carlos Henrique Costa Moreira; Sávio Torres de Farias
Journal:  Theory Biosci       Date:  2008-05-21       Impact factor: 1.919

2.  Predicting three-dimensional conformations of peptides constructed of only glycine, alanine, aspartic acid, and valine.

Authors:  Akifumi Oda; Shuichi Fukuyoshi
Journal:  Orig Life Evol Biosph       Date:  2015-03-21       Impact factor: 1.950

3.  Abiotic formation of valine peptides under conditions of high temperature and high pressure.

Authors:  Yoshihiro Furukawa; Tsubasa Otake; Takato Ishiguro; Hiromoto Nakazawa; Takeshi Kakegawa
Journal:  Orig Life Evol Biosph       Date:  2012-08-23       Impact factor: 1.950

4.  Are proposed early genetic codes capable of encoding viable proteins?

Authors:  Annamária Franciska Angyán; Csaba Ortutay; Zoltán Gáspári
Journal:  J Mol Evol       Date:  2014-05-15       Impact factor: 2.395

5.  Bulk measurements of messy chemistries are needed for a theory of the origins of life.

Authors:  Nicholas Guttenberg; Nathaniel Virgo; Kuhan Chandru; Caleb Scharf; Irena Mamajanov
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-12-28       Impact factor: 4.226

6.  Universal Features for the Classification of Coding and Non-coding DNA Sequences.

Authors:  Nicolas Carels; Ramon Vidal; Diego Frías
Journal:  Bioinform Biol Insights       Date:  2009-06-03

7.  Uniquely localized intra-molecular amino acid concentrations at the glycolytic enzyme catalytic/active centers of Archaea, Bacteria and Eukaryota are associated with their proposed temporal appearances on earth.

Authors:  J Dennis Pollack; David Gerard; Dennis K Pearl
Journal:  Orig Life Evol Biosph       Date:  2013-05-29       Impact factor: 1.950

8.  [GADV]-protein world hypothesis on the origin of life.

Authors:  Kenji Ikehara
Journal:  Orig Life Evol Biosph       Date:  2015-01-16       Impact factor: 1.950

9.  An Interpretation of the Ancestral Codon from Miller's Amino Acids and Nucleotide Correlations in Modern Coding Sequences.

Authors:  Nicolas Carels; Miguel Ponce de Leon
Journal:  Bioinform Biol Insights       Date:  2015-04-15

Review 10.  Pseudo-replication of [GADV]-proteins and origin of life.

Authors:  Kenji Ikehara
Journal:  Int J Mol Sci       Date:  2009-04-02       Impact factor: 6.208

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