Literature DB >> 16231187

Low-volume amplification on chemically structured chips using the PowerPlex16 DNA amplification kit.

Ulrike Schmidt1, Sabine Lutz-Bonengel, Hans-Joachim Weisser, Timo Sänger, Stefan Pollak, Ulrike Schön, Thomas Zacher, Wolfgang Mann.   

Abstract

In forensic DNA analysis, improvement of DNA typing technologies has always been an issue. It has been shown that DNA amplification in low volumes is a suitable way to enhance the sensitivity and efficiency of amplification. In this study, DNA amplification was performed on a flat, chemically structured glass slide in 1-microl reaction volumes from cell line DNA contents between 1,000 and 4 pg. On-chip DNA amplification reproducibly yielded full allelic profiles from as little as 32 pg of template DNA. Applicability on the simultaneous amplification of 15 short tandem repeats and of a segment of the Amelogenin gene, which are routinely used in forensic DNA analysis, is shown. The results are compared to conventional in-tube amplification carried out in 25-microl reaction volumes.

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Year:  2005        PMID: 16231187     DOI: 10.1007/s00414-005-0041-2

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  32 in total

1.  A rapid and simple method for sex identification by heteroduplex analysis, using denaturing high-performance liquid chromatography (DHPLC).

Authors:  T Shinka; T Naroda; T Tamura; K Sasahara; Y Nakahori
Journal:  J Hum Genet       Date:  2001       Impact factor: 3.172

2.  Analysis of short tandem repeat polymorphisms by electrospray ion trap mass spectrometry.

Authors:  S Hahner; A Schneider; A Ingendoh; J Mosner
Journal:  Nucleic Acids Res       Date:  2000-09-15       Impact factor: 16.971

3.  Reduced volume PCR amplification reactions using the AmpFlSTR Profiler Plus kit.

Authors:  Michelle L Gaines; Patrick W Wojtkiewicz; Jennifer A Valentine; Connie L Brown
Journal:  J Forensic Sci       Date:  2002-11       Impact factor: 1.832

4.  Real-time nucleic acid sequence-based amplification in nanoliter volumes.

Authors:  Anja Gulliksen; Lars Solli; Frank Karlsen; Henrik Rogne; Eivind Hovig; Trine Nordstrøm; Reidun Sirevåg
Journal:  Anal Chem       Date:  2004-01-01       Impact factor: 6.986

5.  Multiplex PCR, amplicon size and hybridization efficiency on the NanoChip electronic microarray.

Authors:  Claus Børsting; Juan J Sanchez; Niels Morling
Journal:  Int J Legal Med       Date:  2004-01-14       Impact factor: 2.686

6.  Mitochondrial DNA control region diversity in hairs and body fluids of monozygotic triplets.

Authors:  Heidi Pfeiffer; Sabine Lutz-Bonengel; Stefan Pollak; Rolf Fimmers; Max P Baur; Bernd Brinkmann
Journal:  Int J Legal Med       Date:  2003-10-31       Impact factor: 2.686

7.  Validation of the multiplex kit genRESMPX-2 for forensic casework analysis.

Authors:  A Junge; T Lederer; G Braunschweiger; B Madea
Journal:  Int J Legal Med       Date:  2003-10-10       Impact factor: 2.686

8.  Genetic identification of forensically important flesh flies (Diptera: Sarcophagidae).

Authors:  Richard Zehner; Jens Amendt; Svenja Schütt; Jan Sauer; Roman Krettek; Dalibor Povolný
Journal:  Int J Legal Med       Date:  2004-04-24       Impact factor: 2.686

Review 9.  SNP typing in forensic genetics: a review.

Authors:  Beatriz Sobrino; Angel Carracedo
Journal:  Methods Mol Biol       Date:  2005

10.  Canine-specific STR typing of saliva traces on dog bite wounds.

Authors:  Cordula Eichmann; Burkhard Berger; Maximilian Reinhold; Martin Lutz; Walther Parson
Journal:  Int J Legal Med       Date:  2004-10-12       Impact factor: 2.686

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  9 in total

1.  Low volume amplification and sequencing of mitochondrial DNA on a chemically structured chip.

Authors:  Sabine Lutz-Bonengel; Timo Sänger; Marielle Heinrich; Ulrike Schön; Ulrike Schmidt
Journal:  Int J Legal Med       Date:  2006-11-09       Impact factor: 2.686

2.  Reduced-volume and low-volume typing of Y-chromosomal SNPs to obtain Finnish Y-chromosomal compound haplotypes.

Authors:  Marielle Heinrich; Tina Braun; Timo Sänger; Pekka Saukko; Sabine Lutz-Bonengel; Ulrike Schmidt
Journal:  Int J Legal Med       Date:  2009-08-28       Impact factor: 2.686

3.  Single lymphocytes from two healthy individuals with mitochondrial point heteroplasmy are mainly homoplasmic.

Authors:  Sabine Lutz-Bonengel; Timo Sänger; Walther Parson; Helena Müller; Joachim W Ellwart; Marie Follo; Bernhard Bonengel; Harald Niederstätter; Marielle Heinrich; Ulrike Schmidt
Journal:  Int J Legal Med       Date:  2007-10-06       Impact factor: 2.686

Review 4.  Naturally acquired microchimerism: implications for transplantation outcome and novel methodologies for detection.

Authors:  Michael Eikmans; Astrid G S van Halteren; Koen van Besien; Jon J van Rood; Jos J M Drabbels; Frans H J Claas
Journal:  Chimerism       Date:  2014

Review 5.  Laser capture microdissection in forensic research: a review.

Authors:  Mado Vandewoestyne; Dieter Deforce
Journal:  Int J Legal Med       Date:  2010-08-03       Impact factor: 2.686

6.  Forensic trace DNA: a review.

Authors:  Roland Ah van Oorschot; Kaye N Ballantyne; R John Mitchell
Journal:  Investig Genet       Date:  2010-12-01

7.  DNA profiling of spermatozoa by laser capture microdissection and low volume-PCR.

Authors:  Cai-xia Li; Jun-ping Han; Wen-yan Ren; An-quan Ji; Xiu-lan Xu; Lan Hu
Journal:  PLoS One       Date:  2011-08-11       Impact factor: 3.240

Review 8.  Current genetic methodologies in the identification of disaster victims and in forensic analysis.

Authors:  Ewa Ziętkiewicz; Magdalena Witt; Patrycja Daca; Jadwiga Zebracka-Gala; Mariusz Goniewicz; Barbara Jarząb; Michał Witt
Journal:  J Appl Genet       Date:  2011-10-15       Impact factor: 3.240

9.  Automatic retrieval of single microchimeric cells and verification of identity by on-chip multiplex PCR.

Authors:  Thomas Kroneis; Liat Gutstein-Abo; Kristina Kofler; Michaele Hartmann; Petra Hartmann; Marianna Alunni-Fabbroni; Wolfgang Walcher; Gottfried Dohr; Erwin Petek; Esther Guetta; Peter Sedlmayr
Journal:  J Cell Mol Med       Date:  2009-05-19       Impact factor: 5.310

  9 in total

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