Literature DB >> 16228638

Catalysis and selectivity in prebiotic synthesis: initiation of the formation of oligo(U)s on montmorillonite clay by adenosine-5'-methylphosphate.

Kong-Jiang Wang1, James P Ferris.   

Abstract

Adenosine-5'-methylphosphate (MepA) initiates the oligomerization of the 5'-phosphorimidazolide of uridine (ImpU) in the presence of montmorillonite clay. Longer oligomers form because the 5'-phosphate is blocked with a methyl group that prevents the formation of cyclic- and pyrophosphate-containing compounds. The MepA initiates 69-84% of the 5-9 charge oligomers, respectively. The montmorillonite catalyst also provides selectivity in the oligomerization reactions so that the main reaction pathway is MepA --> MepA3'pU --> MepA3'pU2'pU --> MepA3'pU2'pU3'pU. MepA did not enhance the oligomerization of ImpA. The relative rates of the reactions were determined from an investigation of the products in competitive reactions. Selectivity was observed in the reaction of ImpU with equimolar amounts of MepA3'pU and MepA2'pU where the relative reaction rates are 10.3:1, respectively. In the reaction of ImpA with MepA3'pA and MepA2'pA the ImpA reacts 5.2 times faster with MepA3'pA. In the competitive reaction of ImpU and ImpA with MepA3'pA and MepA3'pU the elongation proceeds on MepA3'pA 5.6 times more rapidly than with MepA3'pU. There is no correlation between the extent of binding to the montmorillonite and reaction rates in the formation of longer oligomers. The formation of more than two sequential 2',5'-linkages in the oligomer chain proceeds more slowly than the addition to a single 2',5'-link or a 3',5'-link and either chain termination or elongation by a 3',5'-linage occurs. The central role that catalysis may have had in the prebiotic formation of biopolymers is discussed.

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Year:  2005        PMID: 16228638     DOI: 10.1007/s11084-005-0657-8

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  21 in total

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2.  A route to 2',5'-oligoadenylates with increased stability towards phosphodiesterases.

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Journal:  J Mol Evol       Date:  1998-06       Impact factor: 2.395

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Authors:  K Kawamura; J P Ferris
Journal:  Orig Life Evol Biosph       Date:  1999-12       Impact factor: 1.950

5.  Template-directed synthesis using the heterogeneous templates produced by montmorillonite catalysis. A possible bridge between the prebiotic and RNA worlds.

Authors:  G Ertem; J P Ferris
Journal:  J Am Chem Soc       Date:  1997-08-06       Impact factor: 15.419

6.  Montmorillonite catalysis of 30-50 mer oligonucleotides: laboratory demonstration of potential steps in the origin of the RNA world.

Authors:  James P Ferris
Journal:  Orig Life Evol Biosph       Date:  2002-08       Impact factor: 1.950

7.  The adsorption of nucleotides and polynucleotides on montmorillonite clay.

Authors:  J P Ferris; G Ertem; V K Agarwal
Journal:  Orig Life Evol Biosph       Date:  1989       Impact factor: 1.950

8.  Sequence- and regio-selectivity in the montmorillonite-catalyzed synthesis of RNA.

Authors:  G Ertem; J P Ferris
Journal:  Orig Life Evol Biosph       Date:  2000-10       Impact factor: 1.950

9.  Dimerization in highly concentrated solutions of phosphoimidazolide activated mononucleotides.

Authors:  A Kanavarioti
Journal:  Orig Life Evol Biosph       Date:  1997-08       Impact factor: 1.950

10.  Formation of RNA oligomers on montmorillonite: site of catalysis.

Authors:  G Ertem; J P Ferris
Journal:  Orig Life Evol Biosph       Date:  1998-10       Impact factor: 1.950

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Journal:  Orig Life Evol Biosph       Date:  2006-12-08       Impact factor: 1.120

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