Literature DB >> 17160436

Selectivity of montmorillonite catalyzed prebiotic reactions of D, L-nucleotides.

Prakash C Joshi1, Stefan Pitsch, James P Ferris.   

Abstract

The montmorillonite-catalyzed reactions of the 5'-phosphorimidazolides of D, L-adenosine (D, L-ImpA) (Figure 1a. N = A, R = H) and D, L-uridine (Figure 1a., N = U, R = H) yields oligomers that were as long as 7 mers and 6 mers, respectively. The reactions of dilute solutions of D-ImpA and D-ImpU under the same conditions gave oligomers as long as 9 and 8 mers respectively. This demonstrated that oligomer formation is only partially inhibited by incorporation of both the D- and L-enantiomers. The structures of the dimers, trimers and tetramer fractions formed from D, L-ImpA was investigated by selective enzymatic hydrolysis, comparison with authentic samples and mass spectrometry. Homochiral products were present in greater amounts than would be expected if theoretical amounts of each were formed. The ratio of the proportion of homochiral products to that of the amount of each expected for the dimers (cyclic and linear), trimers and tetramers, was 1.3, 1.6, and 2.1, respectively. In the D, L-ImpU reaction homochiral products did not predominate with ratios of dimers (cyclic and linear), trimers and tetramers 0.8, 0.44, and 1.4, respectively. The proportions of cyclic dimers in the dimer fraction were 52-66% with D, L-ImpA and 44-69% with D, L-ImpU. No cyclic dimers were formed in the absence of montmorillonite. The differences in the reaction products of D, L-ImpA and D, L-ImpU are likely to be due to the difference in the orientations of the activated monomers when bound to the catalytic sites on montmorillonite. The consequences of the selectivity of montmorillonite as a prebiotic catalyst are discussed.

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Year:  2006        PMID: 17160436     DOI: 10.1007/s11084-006-9013-x

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.120


  24 in total

1.  Effect of inhibitors on the montmorillonite clay-catalyzed formation of RNA: studies on the reaction pathway.

Authors:  K J Wang; J P Ferris
Journal:  Orig Life Evol Biosph       Date:  2001 Aug-Oct       Impact factor: 1.950

Review 2.  HCN and chemical evolution: the possible role of cyano compounds in prebiotic synthesis.

Authors:  J P Ferris; W J Hagan
Journal:  Tetrahedron       Date:  1984       Impact factor: 2.457

3.  The origin of the genetic code.

Authors:  F H Crick
Journal:  J Mol Biol       Date:  1968-12       Impact factor: 5.469

4.  Synthesis of long prebiotic oligomers on mineral surfaces.

Authors:  J P Ferris; A R Hill; R Liu; L E Orgel
Journal:  Nature       Date:  1996-05-02       Impact factor: 49.962

5.  Oligomerization of (guanosine 5'-phosphor)-2-methylimidazolide on poly(C). An RNA polymerase model.

Authors:  T Inoue; L E Orgel
Journal:  J Mol Biol       Date:  1982-11-25       Impact factor: 5.469

6.  Montmorillonite catalysis of 30-50 mer oligonucleotides: laboratory demonstration of potential steps in the origin of the RNA world.

Authors:  James P Ferris
Journal:  Orig Life Evol Biosph       Date:  2002-08       Impact factor: 1.950

7.  The adsorption of nucleotides and polynucleotides on montmorillonite clay.

Authors:  J P Ferris; G Ertem; V K Agarwal
Journal:  Orig Life Evol Biosph       Date:  1989       Impact factor: 1.950

8.  Dimerization in highly concentrated solutions of phosphoimidazolide activated mononucleotides.

Authors:  A Kanavarioti
Journal:  Orig Life Evol Biosph       Date:  1997-08       Impact factor: 1.950

9.  Sequence- and regioselectivity in the montmorillonite-catalyzed synthesis of RNA.

Authors:  Shin Miyakawa; James P Ferris
Journal:  J Am Chem Soc       Date:  2003-07-09       Impact factor: 15.419

10.  Experimental models of primitive cellular compartments: encapsulation, growth, and division.

Authors:  Martin M Hanczyc; Shelly M Fujikawa; Jack W Szostak
Journal:  Science       Date:  2003-10-24       Impact factor: 47.728

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  13 in total

1.  Progress in studies on the RNA world.

Authors:  Prakash C Joshi; Michael F Aldersley; Jonathan D Price; Dmitri V Zagorevski; James P Ferris
Journal:  Orig Life Evol Biosph       Date:  2011-12-03       Impact factor: 1.950

2.  Homochiral selectivity in RNA synthesis: montmorillonite-catalyzed quaternary reactions of D, L-purine with D, L- pyrimidine nucleotides.

Authors:  Prakash C Joshi; Michael F Aldersley; James P Ferris
Journal:  Orig Life Evol Biosph       Date:  2010-08-20       Impact factor: 1.950

3.  The dawn of the RNA World: toward functional complexity through ligation of random RNA oligomers.

Authors:  Carlos Briones; Michael Stich; Susanna C Manrubia
Journal:  RNA       Date:  2009-03-24       Impact factor: 4.942

4.  Chiral polymerization in open systems from chiral-selective reaction rates.

Authors:  Marcelo Gleiser; Bradley J Nelson; Sara Imari Walker
Journal:  Orig Life Evol Biosph       Date:  2012-05-19       Impact factor: 1.950

5.  Influence of montmorillonite on nucleotide oligomerization reactions: a molecular dynamics study.

Authors:  Damien C Mathew; Zaida Luthey-Schulten
Journal:  Orig Life Evol Biosph       Date:  2010-03-07       Impact factor: 1.950

Review 6.  Walking over 4 Gya: Chemical Evolution from Photochemistry to Mineral and Organic Chemistries Leading to an RNA World.

Authors:  Kunio Kawamura; Marie-Christine Maurel
Journal:  Orig Life Evol Biosph       Date:  2017-04-21       Impact factor: 1.950

7.  The Comparison of Hydrochloric Acid and Phosphoric Acid Treatments in the Preparation of Montmorillonite Catalysts for RNA Synthesis.

Authors:  Michael Frank Aldersley; Prakash C Joshi; Yixing Huang
Journal:  Orig Life Evol Biosph       Date:  2017-02-16       Impact factor: 1.950

8.  Montmorillonite-catalysed formation of RNA oligomers: the possible role of catalysis in the origins of life.

Authors:  James P Ferris
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-10-29       Impact factor: 6.237

9.  On the origin of life in the zinc world. 2. Validation of the hypothesis on the photosynthesizing zinc sulfide edifices as cradles of life on Earth.

Authors:  Armen Y Mulkidjanian; Michael Y Galperin
Journal:  Biol Direct       Date:  2009-08-24       Impact factor: 4.540

10.  Significance of mineral salts in prebiotic RNA synthesis catalyzed by montmorillonite.

Authors:  Prakash C Joshi; Michael F Aldersley
Journal:  J Mol Evol       Date:  2013-06-18       Impact factor: 2.395

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