Literature DB >> 16220933

Rapid-freeze-quench magnetic circular dichroism of intermediate X in ribonucleotide reductase: new structural insight.

Natasa Mitić1, Lana Saleh, Gerhard Schenk, J Martin Bollinger, Edward I Solomon.   

Abstract

To elucidate the electronic structure of intermediate X in the oxygen activation reaction of the R2 subunit of ribonucleotide reductase, a protocol has been developed to perform magnetic circular dichroism (MCD) on a rapid-freeze-quench, strain free optical sample. RFQ-MCD data have been collected on intermediate X in the double mutant of R2, Y122/Y356F. While X has been reported to exhibit a broad absorption band at 365 nm, there are at least 10 electronic transitions observed at low-temperature MCD. From C0/D0 ratios, the transitions of X can be divided into three regions: 16 000-22 000 cm-1 region involving spin-allowed ligand field transitions of the Fe(IV), 23 000-24 000 cm-1 region of spin-forbidden, spin-flip transitions on the Fe(IV), and the charge transfer (CT) region from 26 000 to 32 000 cm-1. The C0/D0 ratios from d --> d and CT transitions strongly support significant Fe(IV) character coupled into the paramagnetic center. Ligand field (spin-allowed d --> d region) analysis allows the bis-mu-oxo and mu-oxo plus other monoanionic bridge possibilities for the structure of intermediate X to be distinguished, providing new insight into the molecular mechanism of the cluster formation in R2.

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Year:  2003        PMID: 16220933     DOI: 10.1021/ja036556e

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

1.  Structure, redox, pKa, spin. A golden tetrad for understanding metalloenzyme energetics and reaction pathways.

Authors:  Louis Noodleman; Wen-Ge Han
Journal:  J Biol Inorg Chem       Date:  2006-07-08       Impact factor: 3.358

2.  EXAFS simulation refinement based on broken-symmetry DFT geometries for the Mn(IV)-Fe(III) center of class I RNR from Chlamydia trachomatis.

Authors:  Sandra Luber; Sophie Leung; Carmen Herrmann; Wenge Han Du; Louis Noodleman; Victor S Batista
Journal:  Dalton Trans       Date:  2014-01-14       Impact factor: 4.390

3.  Quantum cluster size and solvent polarity effects on the geometries and Mössbauer properties of the active site model for ribonucleotide reductase intermediate X: a density functional theory study.

Authors:  Wen-Ge Han; Louis Noodleman
Journal:  Theor Chem Acc       Date:  2010-03       Impact factor: 1.702

4.  Evidence for a Di-μ-oxo Diamond Core in the Mn(IV)/Fe(IV) Activation Intermediate of Ribonucleotide Reductase from Chlamydia trachomatis.

Authors:  Ryan J Martinie; Elizabeth J Blaesi; Carsten Krebs; J Martin Bollinger; Alexey Silakov; Christopher J Pollock
Journal:  J Am Chem Soc       Date:  2017-01-27       Impact factor: 15.419

5.  Electronic and geometric structures of the organophosphate-degrading enzyme from Agrobacterium radiobacter (OpdA).

Authors:  Fernanda Ely; Kieran S Hadler; Nataša Mitić; Lawrence R Gahan; David L Ollis; Nicholas M Plugis; Marie T Russo; James A Larrabee; Gerhard Schenk
Journal:  J Biol Inorg Chem       Date:  2011-04-13       Impact factor: 3.358

6.  A 2.8 Å Fe-Fe separation in the Fe2(III/IV) intermediate, X, from Escherichia coli ribonucleotide reductase.

Authors:  Laura M K Dassama; Alexey Silakov; Courtney M Krest; Julio C Calixto; Carsten Krebs; J Martin Bollinger; Michael T Green
Journal:  J Am Chem Soc       Date:  2013-10-31       Impact factor: 15.419

7.  DFT calculations of comparative energetics and ENDOR/Mössbauer properties for two protonation states of the iron dimer cluster of ribonucleotide reductase intermediate X.

Authors:  Wen-Ge Han; Louis Noodleman
Journal:  Dalton Trans       Date:  2009-06-23       Impact factor: 4.390

8.  Novel Approaches for the Accumulation of Oxygenated Intermediates to Multi-Millimolar Concentrations.

Authors:  Carsten Krebs; Laura M K Dassama; Megan L Matthews; Wei Jiang; John C Price; Victoria Korboukh; Ning Li; J Martin Bollinger
Journal:  Coord Chem Rev       Date:  2013-01-01       Impact factor: 22.315

Review 9.  Structure/function correlations over binuclear non-heme iron active sites.

Authors:  Edward I Solomon; Kiyoung Park
Journal:  J Biol Inorg Chem       Date:  2016-07-01       Impact factor: 3.358

10.  Importance of the maintenance pathway in the regulation of the activity of Escherichia coli ribonucleotide reductase.

Authors:  Daniela Hristova; Chia-Hung Wu; Wei Jiang; Carsten Krebs; JoAnne Stubbe
Journal:  Biochemistry       Date:  2008-03-04       Impact factor: 3.162

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